PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G02990.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1201aa    MW: 131913 Da    PI: 7.7359
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G02990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.55e-93364836374
             GRAS   6 lecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshl 96 
                      lecA +v++g +e+a+++Lar   l a+ +g  p +Rla  ++  La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++k++++
  OGLUM12G02990.1  36 LECAAHVETGPMEKATRCLARATGLaAAAAGdGPQKRLAEAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFV 127
                      69********************9996566665799**********************99995444443..34555578899************* PP

             GRAS  97 taNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++L  Rpegpp  +R+T+v++    + e l +++e L++ Aeel+++f+f+  v+ +le
  OGLUM12G02990.1 128 VGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMAEVLSDEAEELDMEFQFHG-VVGQLE 216
                      *********************86679****************9988789*******....***************************.7999** PP

             GRAS 188 dleleeL....rvkpgEalaVnlvlqlhrll............................................................... 214
                      dl++ +L    ++k+gEal+V++ lqlhrll                                                               
  OGLUM12G02990.1 217 DLDFGNLrdvlEIKSGEALVVSCTLQLHRLLsadddamyssrsahlnqmasiaqlqqmavsscppstggggsvqykdddddpyrspatpltfvs 310
                      **9988766668999******************************************************************************* PP

             GRAS 215 ....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres........eerikvErellgreiv 295
                            +++++ +  ++L++v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl +a ++++s        +er+ vEr+++g+ei+
  OGLUM12G02990.1 311 ppasTPHLQMPAALANFLSAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLdDAAAATTSaashlwspDERAQVERVVVGEEIK 404
                      **87555555557778*********************************************766666666788899999*************** PP

             GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       v+   ga+rrerh +l++W +r+e+aGF+ vpls+ a  + + ++r+++ +  +  e  g+l+l+W++rpL+s+SaWr
  OGLUM12G02990.1 405 GVLLRDGAHRRERHDRLRQWAARMEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENRECGGCLLLCWSSRPLYSISAWR 483
                      **************************************************887888899*******************8 PP
2GRAS203.61.1e-62629934111371
             GRAS 111 rvHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198
                       vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l e+++ L+k Ae+l+v+f+f   v  rle+l++++Lr       
  OGLUM12G02990.1 629 VVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLAEMQSLLSKKAESLEVSFRFIS-VIGRLETLDFSNLRSTFqikf 717
                      59*****8653389***************************....9**************************.799**********54444555 PP

             GRAS 199 gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                      g a+a++++lq+hrll                                           s  +++   ++L++++ l+P+++v++eq+adhn+ 
  OGLUM12G02990.1 718 GVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMVIMEQDADHNAL 811
                      *******************************************************98666777778899************************* PP

             GRAS 252 sFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                       F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a  + k  l 
  OGLUM12G02990.1 812 LFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREGKENLL 905
                      ********************77654444456*************************************************************** PP

             GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++ +  + +e++g+l+l W + +L+s+S
  OGLUM12G02990.1 906 SFGLKNCQNKEDRGCLLLSWGSTNLYSIS 934
                      ***888*********************99 PP
3GRAS147.71.1e-4598711642182
             GRAS    2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92  
                       + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk
  OGLUM12G02990.1  987 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLK 1077
                       679*******************************9*****************************888887544.44446778899******* PP

             GRAS   93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 
                       +++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+f   +
  OGLUM12G02990.1 1078 LAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFXS-H 1164
                       *************************966899****************************....9************************87.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.1665463IPR005202Transcription factor GRAS
PfamPF035141.7E-9036483IPR005202Transcription factor GRAS
PfamPF035143.9E-60629934IPR005202Transcription factor GRAS
PROSITE profilePS5098526.763630917IPR005202Transcription factor GRAS
PROSITE profilePS5098527.7869601201IPR005202Transcription factor GRAS
PfamPF035143.9E-439871164IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1201 aa     Download sequence    Send to blast
MFSGTDSSSP ELSLCSPYGP WTQGRGPTEE LGLAPLECAA HVETGPMEKA TRCLARATGL  60
AAAAAGDGPQ KRLAEAMVDC LARRLLRPVQ AITDALIDPS VYLDRRSVRA ARRGFFELSP  120
FPKVAFVVGN RAIVEAVENE SLVHVVGMSG PFTQPCQWIQ LLHELRRRPE GPPRVVRLTV  180
VHDDGELLAK MAEVLSDEAE ELDMEFQFHG VVGQLEDLDF GNLRDVLEIK SGEALVVSCT  240
LQLHRLLSAD DDAMYSSRSA HLNQMASIAQ LQQMAVSSCP PSTGGGGSVQ YKDDDDDPYR  300
SPATPLTFVS PPASTPHLQM PAALANFLSA VRALSPKIVV VAEQDADHNG VSFRKRFCEA  360
LHHYAAVFDS LDDAAAATTS AASHLWSPDE RAQVERVVVG EEIKGVLLRD GAHRRERHDR  420
LRQWAARMEM AGFTGVPLSY AAIRKGNDMV RRCGLRRCEN RECGGCLLLC WSSRPLYSIS  480
AWRPAASGGA GSGSERSEYI HVVIFGPNLT MSRRATSYGL QAPKAQSTIR KGFGHLLLLP  540
SPHTDPPCRV GRSAAAAAMS ASLHRPALAS LLQIEAGGCG VLGVFAPGPR LPCRGYHPCR  600
SSSTLGSASL TPRRRHISPP GLRIRDVLVV HIVDLSCSAA HPWQWLKLLD DFHGRPGGAP  660
ELYLTVLHDD NDFLAEMQSL LSKKAESLEV SFRFISVIGR LETLDFSNLR STFQIKFGVA  720
VAISCALQMH RLLLVDDNLS STSIAQLQKM ANFTQPKQMA SSVCSPASTL NYLQTPSPRT  780
PKLLARLLSA IRALKPNIMV IMEQDADHNA LLFRDRFNEV LNYYAALFDC FHAVAAANPG  840
RTDERLRVER MILREEIKNI LVCEGVHRHE RHERLDQWAM HMEESGFHNV QLSFSAIREG  900
KENLLSFGLK NCQNKEDRGC LLLSWGSTNL YSISLRLCCT DRGMFQDDML SSATSSPASS  960
VYSPSPSPSN GSWVQELSHD QQSVRLIGLL YQCAAEVSAG SFDRANLCLE HITQLASLDA  1020
PHALQRLAAV FADALARKLL NLIPGLSRAL LSSANSADAH LVPVARRHMF DVLPFLKLAY  1080
LTTNHAILEA MEGERFVHVV DFSGPAANPV QWIALFHAFR GRREGPPHLR ITAVHDSKEF  1140
LANMAAVLSK EAEAFDIAFQ FXSHAAGLRG RMRKYDFRMR LCRPHAKIVI FADLLAHAFK  1200
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-193711617380Protein SCARECROW
5b3h_A1e-193711616379Protein SCARECROW
5b3h_D1e-193711616379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9351540.0AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.10.0scarecrow-like protein 3
TrEMBLA0A0E0BNR50.0A0A0E0BNR5_9ORYZ; Uncharacterized protein
STRINGOGLUM12G02990.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-71scarecrow-like 3