![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM12G02730.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bZIP |
Protein Properties |
Length: 709aa MW: 77490.5 Da PI: 4.8489 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM12G02730.2 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Ogu&pid=OGLUM12G02730.2) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 24.7 | 5.2e-08 | 569 | 605 | 14 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
ReA r++Rq+Kka +++Lee+vk L N++L k+l+
OGLUM12G02730.2 569 REAVRKYRQKKKAHTAHLEEEVKRLRVINQQLVKRLQ 605
9********************************9987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0000166 | Molecular Function | nucleotide binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 709 aa
Download sequence Send
to blast |
MPRRTDNAAS ANSVEPEKSE ECLEFDDDEE EEVEEEEIEY EEIEEEIEEE EVEEDEDVVE 60 EVEEVDEEED EEEEEESDET EGVSKTKGVH QKDVTEKGKH AELLALPPHG SEVYVGGISS 120 DVSSEDLKRL CEPVGEVVEV RMMRGKDDSR GYAFVNFRTK GLALKAVKEL NNAKLKGKRI 180 RVSSSQAKNK LFIGNVPHSW TDDDFRKVVE EVGPGVLKAD LMKVSSANRN RGYGFVEYYN 240 HACAEYARQE MSSPTFKLDS NAPTVSWADP KNNDSASTSQ VKSVYVKNLP KNVTQAQLKR 300 LFEHHGEIEK VVLPPSRGGH DNRYGFVHFK DRSMAMRALQ NTERYELDGQ VLDCSLAKPP 360 AADKKDDRVP LPSSNGAPLL PSYPPLGYGI MSVPGAYGAA PASTAQPMLY APRAPPGAAM 420 VPMMLPDGRL VYVVQQPGGQ LPLASPPPQQ AGHRSGSGGR HGGSGGRYGG GGGSSGSSRP 480 EECVSETRLY MRILPVSQSA ESDGALYRQF TPVSHMDYEI SGPESEVDSE STPIHATTLT 540 PVSSAQMMIV VEVTKPSQRR AASHWATARE AVRKYRQKKK AHTAHLEEEV KRLRVINQQL 600 VKRLQGQAAL EVEVVRLRSL LVDVRSRING ALGSCPIQAQ CGVDNVLGCD GMAQCFAGKP 660 ELGVRQSCAP STVNCHISSD SGQNLVVPHA LSPSDVIGSF MVSSTSKDE
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3D Structure ? help Back to Top |
![Structure](draw_protein_structure.php?sp=Ogu&pid=OGLUM12G02730.2) |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6r5k_D | 3e-14 | 91 | 449 | 22 | 479 | Polyadenylate-binding protein, cytoplasmic and nuclear |
6r5k_F | 3e-14 | 91 | 449 | 22 | 479 | Polyadenylate-binding protein, cytoplasmic and nuclear |
6r5k_H | 3e-14 | 91 | 449 | 22 | 479 | Polyadenylate-binding protein, cytoplasmic and nuclear |
Search in ModeBase |
Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Ogu&pid=OGLUM12G02730.2) |
No. |
Start |
End |
Sequence |
1 | 464 | 472 | GGRYGGGGG |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes (PubMed:27495811). Component of ribonucleosomes, which are complexes of at least 20 other different heterogenious nuclear ribonucleoproteins (hnRNP). hnRNP play an important role in processing of precursor mRNA in the nucleus (By similarity). Required during flower development and for cell fate determination (PubMed:21304947). Acts both as an antagonist and as a promoter of polycomb LHP1 gene regulation activity, depending of target genes, to regulate the transcription of stress-responsive and flowering genes (PubMed:21304947, PubMed:27495811). May regulate histone H3 trimethylation on lysine 27 (H3K27me3) (PubMed:21304947). Recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and acetylated at 'Lys-9' (H3K9ac), leading to epigenetic activation. When in complex with LHP1, recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and 'Lys-27' (H3K27me), mostly corresponding to stress-responsive genes (PubMed:27495811). May function as a suppressor of cell-autonomous immune responses involving glucosinolates, salicylic acid (SA) and jasmonic acid (JA) pathways toward pathogenic bacteria and fungi (PubMed:24914891). {ECO:0000250|UniProtKB:O60506, ECO:0000269|PubMed:21304947, ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Slighty induced upon pathogen infection (e.g. P.syringae) (PubMed:24914891). Rapidly recruited to chromatin upon methyl jasmonate treatment (MeJA) to mediate transcriptional gene activation (PubMed:27495811). {ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK068700 | 0.0 | AK068700.1 Oryza sativa Japonica Group cDNA clone:J013160I09, full insert sequence. |
GenBank | AK069493 | 0.0 | AK069493.1 Oryza sativa Japonica Group cDNA clone:J023024M07, full insert sequence. |