PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G17080.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 241aa    MW: 26687.5 Da    PI: 4.902
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G17080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.32.1e-13190224133
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                      C+nCg ++  Tp++R++p+g+k+ CnaCGl++   
  OGLUM11G17080.1 190 CTNCGESSdaTPMMRHAPNGTKSFCNACGLMWENS 224
                      ********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.50796131IPR010399Tify domain
PfamPF062039.2E-7158189IPR010402CCT domain
SuperFamilySSF577168.55E-9183234No hitNo description
SMARTSM004011.8E-6184237IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-12189229IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.99E-10189241No hitNo description
PfamPF003205.0E-11190223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDNPTPSSSS GGGGAAAAAN ASSDEHRKTS PATAADFFDE EHTFDDILLP VDLFDFTHGL  60
DAGDGCYVDD QAAIGQKPLS PAPEPAAEQQ PSPAPEHGDD ERLVMYYQGQ EYVFDSVQPQ  120
KIENIFHHLN GQEMIPQSIR PQPTNLVRPI TVPEDFDRFA ALTRYREKKR NIKFIKKADY  180
SARKEVALRC TNCGESSDAT PMMRHAPNGT KSFCNACGLM WENSRKIRKI RNPTSGEQED  240
Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1088710.0AC108871.3 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616301.11e-158GATA transcription factor 19
TrEMBLA0A0E0BKG20.0A0A0E0BKG2_9ORYZ; Uncharacterized protein
STRINGOGLUM11G17080.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-26ZIM-like 1