 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OGLUM11G15900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NF-YC |
| Protein Properties |
Length: 258aa MW: 28268.5 Da PI: 5.1115 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM11G15900.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 59.8 | 6e-19 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
+++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v r fdfl+++v +
OGLUM11G15900.1 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVRRYSSFDFLTEVVNK 86
579************************************************************************99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60
TLNSFHLKQC VRRYSSFDFL TEVVNKVPDL GGADSCGDDR ALPRRRKALP NGSDPENEES 120
RSSKMAIRSA NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFADQ GEALPGEETV 180
PETIHGTESV PPSTHPPAEA PSAAEIPAPN PKVEEAKNDD HQPDWPMPDA IGNIGVGPSG 240
FGHLTVQVDE DEDYDNED
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 106 | PRRRK |
| 2 | 136 | 145 | RGRGRGRGRG |
| 3 | 136 | 146 | RGRGRGRGRGR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF464904 | 0.0 | AF464904.1 Oryza sativa repressor protein (DrAp1) mRNA, complete cds. |
