PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM11G14240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 665aa MW: 73591.9 Da PI: 8.5505 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.5 | 2.4e-31 | 33 | 161 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +G+ F+Pt+ elvv+yL +++ +++l++ ++i++vdi ++Pwd+ ++++ +fF++++++++++ ++n a+ +g+W+ g++ ++++k OGLUM11G14240.1 33 SVGCVFRPTEGELVVNYLYRRAMQEPLPC-DFITDVDIQCHNPWDIV--PGEKKNGKHFFTRKENSHPRDYESNHAAGDGFWRLAGTEVPIYNK 123 68***************************.99**************5..34566799************************************* PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+k+tLvf+ +++++e+t Wvm+e+rl OGLUM11G14240.1 124 psggaDEKLVGMKRTLVFHFRKSSSTERTGWVMQEFRL 161 999988889**********9999*************98 PP | |||||||
2 | NAM | 97.8 | 1.6e-30 | 403 | 528 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 hPt+ elv +yL +++ + +l e+i +v+i++++Pwd+ +++++ek yfF++++ k ++++r+nr+t++g+W++ g++k+v+ + + OGLUM11G14240.1 403 HPTEGELVFHYLYRRAVNMPLLS-EFICDVNILRHNPWDIVpGALTEREKGKYFFMQKEIKCPSSRRSNRITSKGFWRSAGSEKPVYYNqgG-- 493 9*******************777.89**************54788889999************************************98551.. PP NAM 99 l.....vglkktLvfykgrapkgektdWvmheyrl 128 vg+++tL+fy g+++++e+t+W m+e+rl OGLUM11G14240.1 494 GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 528 234566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-33 | 29 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.74 | 32 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-17 | 34 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-33 | 215 | 226 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-34 | 396 | 538 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.046 | 396 | 597 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-15 | 403 | 528 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MRRICPRFKI NGRTMAGPGV CINLLNGTTM HLSVGCVFRP TEGELVVNYL YRRAMQEPLP 60 CDFITDVDIQ CHNPWDIVPG EKKNGKHFFT RKENSHPRDY ESNHAAGDGF WRLAGTEVPI 120 YNKPSGGADE KLVGMKRTLV FHFRKSSSTE RTGWVMQEFR LAGASLVPCL VMRPATGDVS 180 MPPCGCTETT TTKKNNGSPS AAHTHAPLVE TMVEPDNSWM ICRIYKKRQR APQVIIPPSI 240 GNAREAVLAV PAIGNAGDRQ VNFIDFPGHR CFEEGSDESA NVITKDKGSD ARQEKKNGKH 300 FFTCKEKKHH GNNCRNHAAG VGFWRLASTE ALEVFICREH GMSNARVPTS WFLPLALLCD 360 ATISPSFEEG SSESVNVTDN VKDGGGHCMN GATMHLPAVG MSHPTEGELV FHYLYRRAVN 420 MPLLSEFICD VNILRHNPWD IVPGALTERE KGKYFFMQKE IKCPSSRRSN RITSKGFWRS 480 AGSEKPVYYN QGGGSDCMLV GMRRTLTFYF GNSRTAERTK WGMQEFRLAG NGLSPYPAMK 540 HATGDGSKPP CNCAETTIAK RNDGLSAVLR NVLAVTPLVE TVVEPDGSWL ICRIYRTRQR 600 ALPVITPPAI ENAREIIIPP ANGNAREAQV RFIDFLRQGS HCSCIVGPSL AEGSDESAGS 660 VDQKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-18 | 30 | 528 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940196 | 0.0 | FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616648.1 | 1e-118 | NAC transcription factor NAM-1 | ||||
TrEMBL | A0A0E0BJF0 | 0.0 | A0A0E0BJF0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G14240.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 7e-26 | NAC domain containing protein 83 |