 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OGLUM11G13820.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
SBP |
| Protein Properties |
Length: 316aa MW: 33265.9 Da PI: 7.907 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM11G13820.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 98.1 | 7.6e-31 | 78 | 133 | 23 | 78 |
--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 23 vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
vCe+h+k+pvv+v+g+eqrfCqqCsrfh+l efD++k+sCr+rL++hn+rrrk+q+
OGLUM11G13820.1 78 VCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 133
9****************************************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MEWAAAATKA ASWGMAVAAA DDAGPTMLSF AGPSSSSSSP DAAAAAAAAA AALHDFSVRA 60
RPAAXVLGRR VPVGPQPVCE AHAKTPVVVV AGQEQRFCQQ CSRFHNLAEF DDGKKSCRKR 120
LDGHNRRRRK PQHDALNPRS FLPYHQANQF SVYPQTFPIA DQNADAIMRP LDRHLPFSIS 180
FSGTFREPKQ FPFMQDGGSG LGAARHDLLR PFSSPEDGAN ITTARSACNG VPHGLDPECA 240
LSLLSSSLHP SPAAGISSAT APPQFAPSSF SRIAASSQAV TTAFASDGGS VAGDHVLVPA 300
VTYEDPSQAM PFSWQV
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 113 | 130 | KKSCRKRLDGHNRRRRKP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC133608 | 0.0 | AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence. |
| GenBank | AC135569 | 0.0 | AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
