PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G11800.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 460aa    MW: 47163.2 Da    PI: 7.3815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G11800.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09286333455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OGLUM11G11800.2 286 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 333
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17280350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-11280337No hitNo description
PROSITE profilePS5088815.802282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17282349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6286333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL  60
MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM  120
IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA  180
PGSKARGKDA ATSIAKVLPL LSASPLQSQR RTSPETMVNF PQSPEPGTKA KKCKLSADAA  240
GDEDTKPVAG DAGHGGNGKG KVLDAAGEPP KDYIHVRARR GQATDSHSLA ERVRREKISE  300
RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLSTVNPQL DFDVDKFIPK  360
DQANDPSMPA PLSLPPPPPP LSYSPEGASP GICYASSQGT AMQSVVTSTK HLETAPTFAN  420
HHVIPVPSLD GFHSAHSQAG SCMWEDDLQS VVQMGFRGNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0BIM90.0A0A0E0BIM9_9ORYZ; Uncharacterized protein
STRINGOGLUM11G11800.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-54bHLH family protein