PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G08660.4

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 886aa MW: 97782.6 Da PI: 5.8838

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G08660.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	532	582	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OGLUM11G08660.4 532 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 582 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	521	602	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-26	535	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-24	779	874	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-24	785	867	No hit	No description
SMART	SM00666	1.4E-25	788	870	IPR000270	PB1 domain
Pfam	PF00564	5.5E-19	788	869	IPR000270	PB1 domain
PROSITE profile	PS51745	26.147	788	870	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV 60 STAVGSSSRQ DDADVSITEE GTTRTRSDRA AGLASGEPVA VGIGSVPKPF DGVTLTERML 120 RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYATR HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP 300 VCSKRDVLVS IEYGAKFGKR NKEVLCIEES ACYVNDTRVR DFVQVCAEHP LEKGQGVAGN 360 AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC 420 KGGEEQQLLL DSISATMRKV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG 480 REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL 540 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE 600 GVLKYDPSTG CLISSVSPSI EPVLMNVEHK GSDPLPIESE LPHLNFEPDC DAYRREHAGQ 660 DVLHKLQNKQ NGEINFDMDD GELFRNSHST RTLSGAFCED MSNGLYVARE MTCVAKTGTR 720 TERLEHKPSS RDSFSAPQEY RMESETDKSN KNSKQSLPSS SSMTDCSTSS GETFKSIKSQ 780 SANESNTTVV VKASYKNDTI RFKLLPSMKY EQLLEEIAKR LKLSVGVFQI KYKDDEGDWV 840 ILASDADLQE CLEILDTTRL HILKLQVQDV VCPIGSSSGS CSMLRP

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MDGGGTPDGD PVPDMDMLML SSALDGLDSY TDLVAGSSVA DSIFSALTCF PPSQERLLHV  60
STAVGSSSRQ DDADVSITEE GTTRTRSDRA AGLASGEPVA VGIGSVPKPF DGVTLTERML  120
RALAMLKEAS GGEAILVQVW MPVRNGEQHV LTTSDQPFLL DQKLTGYREV SRQFTFSAEE  180
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYATR HEVRGSLAMP VFNSSGGSCC  240
AVLEVVMTRE KDNFCLEMVN VSNALQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP  300
VCSKRDVLVS IEYGAKFGKR NKEVLCIEES ACYVNDTRVR DFVQVCAEHP LEKGQGVAGN  360
AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC  420
KGGEEQQLLL DSISATMRKV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG  480
REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL  540
QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE  600
GVLKYDPSTG CLISSVSPSI EPVLMNVEHK GSDPLPIESE LPHLNFEPDC DAYRREHAGQ  660
DVLHKLQNKQ NGEINFDMDD GELFRNSHST RTLSGAFCED MSNGLYVARE MTCVAKTGTR  720
TERLEHKPSS RDSFSAPQEY RMESETDKSN KNSKQSLPSS SSMTDCSTSS GETFKSIKSQ  780
SANESNTTVV VKASYKNDTI RFKLLPSMKY EQLLEEIAKR LKLSVGVFQI KYKDDEGDWV  840
ILASDADLQE CLEILDTTRL HILKLQVQDV VCPIGSSSGS CSMLRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0BHJ0	0.0	A0A0E0BHJ0_9ORYZ; Uncharacterized protein
STRING	OGLUM11G08660.3	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein