PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G04690.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 264aa    MW: 28502.8 Da    PI: 8.9955
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G04690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.21.4e-18551923128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgk....rknratk..sgyWk.atgk 88 
                      p f+F+Ptd ++v  yL +++   + ++  vi++ d+ ++ePw+L +++ + ++   fF++ +++    g     + +ra+k   g+W+ ++g+
  OGLUM11G04690.1  55 PAFKFDPTDADIVASYLLPRALYGRGHA-AVIQD-DVSRCEPWTLMREHGHATSAHAFFVHDHESVGgGGGggrrKVQRAVKngGGVWRiQKGE 146
                      78******************99999777.55655.**********855444444445666666666532223332445555445889*955566 PP

              NAM  89 dkevlsk........kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                        +++          +  l  v  ++ L f+  r+ +++++ Wvmhey++
  OGLUM11G04690.1 147 VATLTIVrgggggggE--LdvVYKRRNLSFH--RRGESSSSGWVMHEYEI 192
                      5554444556665433..1559999******..5555679********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-2542207IPR003441NAC domain
PROSITE profilePS5100521.73953208IPR003441NAC domain
PfamPF023655.2E-1455192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MASTSRKRSA RSLQEDDQTS SATEAPAAVR EDEERVAVAG MEAWRFGFSR FSWFPAFKFD  60
PTDADIVASY LLPRALYGRG HAAVIQDDVS RCEPWTLMRE HGHATSAHAF FVHDHESVGG  120
GGGGGRRKVQ RAVKNGGGVW RIQKGEVATL TIVRGGGGGG GELDVVYKRR NLSFHRRGES  180
SSSGWVMHEY EITSPPLPAT VLSRIRATPR AKDKKLCIKE EPSCSTSAAG DGDNNYGSGG  240
DNNVSHCTCV RTVTAITFMA TAGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340440.0AC134044.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616128.11e-154NAC domain-containing protein 89
TrEMBLA0A0E0BG130.0A0A0E0BG13_9ORYZ; Uncharacterized protein
STRINGOGLUM11G04690.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-09NTM1-like 8