PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03790.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 445aa    MW: 50389.4 Da    PI: 6.4099
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03790.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.27.9e-27114210186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  OGLUM11G03790.3 114 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 207
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  OGLUM11G03790.3 208 HMN 210
                      996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-20112235No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI  60
SDGVQLGQHG KIAHHHHHHI HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV  120
KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTACNVV ENHSLLDHMN ISEKMKEDAR KILNSKHLFY EEMCSYHNNN  240
RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEENE EEHRAVDTNI  300
RGPSMHKRMW HVVDHGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGSDL ALVQKDLALK  360
AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KRLQINSIQD  420
RGELFLTMNA EVKSKCGGLA SQMAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615142.10.0uncharacterized protein LOC4349866 isoform X2
TrEMBLA0A0E0BFP80.0A0A0E0BFP8_9ORYZ; Uncharacterized protein
STRINGOGLUM11G03790.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-87sequence-specific DNA binding transcription factors