PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03650.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 520aa    MW: 57650.4 Da    PI: 4.359
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS182.33.5e-56964392354
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                       +lLl+ Aeav++gd  la+ + +rl +       + +++++ Rla +f ++L++r+++ ++++y+   p++ +    s ++ ++++ +e+sP+
  OGLUM11G03650.1  96 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSPF 182
                      679***********************998554333334479******************9899984...55554....456778899******* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +kf+h+t+NqaIl+a+ g+  vH++D++i++G+QW +L+  La    g  s+R+T++   +  ++ +  ++ + L++fA++l++pf++n + ++
  OGLUM11G03650.1 183 VKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKSFRLTAITTYADCHASTHDTVVRLLSEFADSLELPFQYNSICVH 274
                      *******************************************7..4668*********887799999999999****************8555 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsl 271
                      + ++  l+++  + + +++V++    ++    s+s+ +  + +L +vk+l+Pk+vv +e++       ++ +s+sF+e f+eal++++++f+s+
  OGLUM11G03650.1 275 SEDE--LHAFFEDCKGSVIVSCDTTSMYYK--SLSTLQ--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEALHHFTTVFESM 362
                      4444..5778777799******99777775..554444..69*******************6555443444666******************** PP

             GRAS 272 eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                      ++ +   s     + vE ellg++i++ v + g+ r+e +      +e l   GF + +ls  + +qa++l+  ++ + + v  +
  OGLUM11G03650.1 363 ASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFGVVFK 439
                      77776666578899*********************999888.....5555..5********************999.44555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.51169440IPR005202Transcription factor GRAS
PfamPF035141.2E-5396439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
METMSYPCSP LLSFPANEES GYFIWSSQAA LHVDPCSDQQ EDLDLLDTMV LDSNELHQHD  60
APDVDVSINC DDRIFGQESV NLAAIQEELL EEDSLSDLLL AGAEAVEAGD SILASVAFSR  120
LDDFLSGIPE NGAASSFDRL AYHFDQGLRS RMSSASTGCY QPEPLPSGNM LVHQIIQELS  180
PFVKFAHFTT NQAILDAIIG DMDVHVVDLN IGEGIQWSSL MSDLARCGGK SFRLTAITTY  240
ADCHASTHDT VVRLLSEFAD SLELPFQYNS ICVHSEDELH AFFEDCKGSV IVSCDTTSMY  300
YKSLSTLQSL LLVCVKKLQP KLVVTIEEDL VRIGRGVSPS SASFVEFFFE ALHHFTTVFE  360
SMASCFIGSS YEPCLRLVEM ELLGPRIQDF VVKYGSVRVE ANASEVLEGF MACELSACNI  420
AQARMLVGLF NRVFGVVFKK ISLLMVYYIS LGKNDLREPN KVIWSSLAAG CGSHGIVVLA  480
FYAADKLLEF KPKGIETYIH PAVERAHFHK EDRMWQEYEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2913444453373Protein SCARECROW
5b3h_A2e-2913444452372Protein SCARECROW
5b3h_D2e-2913444452372Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205340.0AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617104.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A0E0BFM60.0A0A0E0BFM6_9ORYZ; Uncharacterized protein
STRINGOGLUM11G03650.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-29GRAS family protein