PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02260.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 195aa    MW: 21383.8 Da    PI: 9.3842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.77.2e-13156319374
             GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +e+aGF+ vpls+ a  + + ++r+++ +  + +e  g+l+l+W++rpL+s+SaWr
  OGLUM11G02260.1   1 MEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENKECGGCLLLCWSSRPLYSISAWR 56 
                      89*************************887999999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.5E-10156IPR005202Transcription factor GRAS
SuperFamilySSF561767.19E-896158IPR016166FAD-binding, type 2
Gene3DG3DSA:3.30.465.108.1E-896151IPR016169CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016614Molecular Functionoxidoreductase activity, acting on CH-OH group of donors
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEMAGFTGVP LSYAAIRKGN DMVRRCGLRR CENKECGGCL LLCWSSRPLY SISAWRPAAS  60
RGAGSGSERS ELINLYKRQR VLDLQLCGEE RFERMVGAHG TGARLPPIDE QVISMKLVTP  120
AKGTIELSRE KDPDLFYLAR CGLGGLGVVA EPSQSIFPIN PTTAHFHQIS LPIAVPRKPS  180
NLKHNLVPVG VLNRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780341e-112FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BF481e-141A0A0E0BF48_9ORYZ; Uncharacterized protein
STRINGOGLUM11G02260.11e-142(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-13scarecrow-like 3