PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 564aa    MW: 61762.7 Da    PI: 5.357
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.12.3e-981745561373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arl++   +l + l +s+++  +  e l a+++f  ++ +  ++
  OGLUM11G02110.1 174 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPAGDATERLAHYFADGLEARLTG-AASLERRLLASAER-ASAMELLEAYQVFMAACCFKWVA 265
                      689****************************************************.67777777666665.579999***************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +  aN aIl+a+eg +++Hi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f+++++ r
  OGLUM11G02110.1 266 FTFANMAILRAAEGRSKLHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNGARAFGLPFKFRAVAVAR 359
                      ***********************86538****************************************************************** PP

             GRAS 186 ledleleeL.....rvkp.gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                      +e+++ e+       v+p +Ea++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+l
  OGLUM11G02110.1 360 WETVTAEDVvgvggGVDPdEEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDML 453
                      ********9888888888999*****************98877779************************************************ PP

             GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                       a+ p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+
  OGLUM11G02110.1 454 GATTPEEGsHLRVVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEGDVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKG 547
                      77777765499****************************************************************999**************** PP

             GRAS 365 rpLvsvSaW 373
                      r L++ SaW
  OGLUM11G02110.1 548 RILYAHSAW 556
                      ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.302148537IPR005202Transcription factor GRAS
PfamPF035147.9E-96174556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED MDDDVFFCLY PDHPALLEAQ QPFAQILSSS  60
SGISGELNSA AMEDSAALMM QGSGNGRGRK GSKHGGDELE AEVGRASKLM ATLEEEDDDD  120
DGVGEMLEKM MLNGDEDEAF HGETNAPRVP AEKKGGKPAP RRRRRQGKGE VVDLRELLMS  180
CAQAVASGNR RSAGELLEQI KRHSSPAGDA TERLAHYFAD GLEARLTGAA SLERRLLASA  240
ERASAMELLE AYQVFMAACC FKWVAFTFAN MAILRAAEGR SKLHIVDYGG QYHGLQWPSL  300
LQRLAEREGG PPEVRMTLVG HPQPGFRPAR RLERTGRRLS NGARAFGLPF KFRAVAVARW  360
ETVTAEDVVG VGGGVDPDEE AVVVNDVLSL GTLMDESGVF DDPSPRDTVL GSIRDMRPAV  420
FVQAVVNGAH GAPFFPTRFR EALFFFSALF DMLGATTPEE GSHLRVVLER DVLRRAAVGV  480
IAGEGAERVE RPETYRRWQA RNRRAGLRQV AVEGDVVEAV RRRVRRRHHE EFVIEEDAGW  540
LLQGWKGRIL YAHSAWVVAE DGAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-3818155725378Protein SCARECROW
5b3h_D5e-3818155725378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA0A0E0BF280.0A0A0E0BF28_9ORYZ; Uncharacterized protein
STRINGOGLUM11G02110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-77SCARECROW-like 14