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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OGLUM10G16690.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 318aa MW: 34835.7 Da PI: 4.9146 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM10G16690.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 159.7 | 1.2e-49 | 5 | 122 | 1 | 122 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
+ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL+ ++e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v +
OGLUM10G16690.1 5 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQ--GYEEQSEWYFFSYKDRKYPTGTRTNRATMTGFWKATGRDKAVRE 95
69****************************.9***************8..345789*************************************9 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWv 122
+++l+g++ktLvfykgrap+g+ktdW+
OGLUM10G16690.1 96 -RSRLIGMRKTLVFYKGRAPNGHKTDWI 122
.999***********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MESCVPPGFR FHPTDEELVG YYLRKKVASQ KIDLDVIRDV DLYRIEPWDL QGYEEQSEWY 60
FFSYKDRKYP TGTRTNRATM TGFWKATGRD KAVRERSRLI GMRKTLVFYK GRAPNGHKTD 120
WIEEGWVVCR AFKKRTMQPP RSSIGAWEAS YSYHDPAIFV GGGEHFKQET AAELDGVAAA 180
AGANAFLRYS TRLAELPQLE SPPLPSQGSQ AASAVVDGEE DNADSSRRPG GGGGAAAAVT 240
TDWRAFDKFV ASQLSPEEQH TCRATDDDDM AALLLLDGGG QEDDAGRWLG SAGLLSAVAA 300
DATTDCGLGT SCVPGDIN
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC092389 | 0.0 | AC092389.4 Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence. |
| GenBank | AC113948 | 0.0 | AC113948.5 Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence. |
| GenBank | AK106313 | 0.0 | AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | JN634073 | 0.0 | JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds. |
