PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G15720.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 864aa    MW: 90266 Da    PI: 5.9929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G15720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.23.6e-31180264187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+qlea
  OGLUM10G15720.1 180 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 264
                      8********************************************************************97..56668*******85 PP
2trihelix111.16.8e-35556641187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  OGLUM10G15720.1 556 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 641
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0034177239IPR001005SANT/Myb domain
PfamPF138373.0E-21179265No hitNo description
PROSITE profilePS500906.737179237IPR017877Myb-like domain
CDDcd122032.49E-28179244No hitNo description
SMARTSM007170.0087553615IPR001005SANT/Myb domain
PROSITE profilePS500907.317555613IPR017877Myb-like domain
PfamPF138379.4E-24555642No hitNo description
Gene3DG3DSA:1.10.10.604.7E-4555612IPR009057Homeodomain-like
CDDcd122036.94E-29556620No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MAIYYLEREG LTHNMPMHGH FYTPLPLNQR HADTTNAADM TRGPMRMWAP HVSGVSVSPD  60
VLIIPSPPFP SGNTRGGGGG GGGSSMQQQQ PGGGGGGVQQ FGAVAPEMSP FSPAGGGGGG  120
RISMAEAASP ISSRPPPAQQ QFDELGVGGG GGGGGGFDAE ALAAAAVGEE GASGGAGGNR  180
WPRQETLALL KIRSDMDAAF RDATLKGPLW EEVSRKLAEE GYRRSAKKCK EKFENVHKYY  240
KRTKESRAGR NDGKTYRFFT QLEALHGTAA GVVAAPSPVT SLAPPPATAV GVSGGVRAPA  300
EPPPAVVMGN VMSFSTSNTE EYSDEEDSDD EGTEDMGGGG GDERGKRKRL SEGGAAAGGG  360
GGGGGGGGSG KMMRFFEGLM KQVMERQEAM QQRFLEAIEK REQDRMIREE AWRRQEMARL  420
AREQEILAQE RAMAASRDAA VVSFIQKITG QTIPMPPIIA APAITVMPPP APSQPPQPPP  480
PPSQPTPITS VAPAPPPPPP AAAAAASQPS PQATKSPLPA TPQTQSSMDI VMTAAEAHDA  540
GYDGSGGGGG QPSSSRWPKA EVHALIQLRS NLDNRYQEAG PKGPLWEEIS AGMRRLGYSR  600
SSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRNKAALN SSSSTAAAAA  660
PALPPPEHAE PAVTVAAPIS QTPPPPPQPV TTTKNGNGTS STNGEGGGGG SGGMQMQASN  720
GSVVAGNKFF TGAAAKKPED IMKEMMEQRP QQPAAANNAF NRTDGGGGGG GVDSDNMDED  780
NEDDYDDDDD DDDDDVDGNK MQYEIQFQHQ HHHQQPPQHR HQQSVVRPNA AASAAAGGNP  840
PGTAAPATAA AATTTTGSFL AMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17083SGNTRGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252960.0AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A0E0BCQ10.0A0A0E0BCQ1_9ORYZ; Uncharacterized protein
STRINGOGLUM10G15720.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-50Trihelix family protein