PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G14340.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 275aa MW: 27881.2 Da PI: 8.4778

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G14340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.2	7.7e-33	105	161	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr+++k++ OGLUM10G14340.1 105 PRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRA 161 679***********************************************9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	26.468	106	160	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-30	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-16	113	151	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSSPFLGSSS SSASSPLSYL TPPRPPSPPP PPPLLMVRHG LARWLTDLDD ELMVFDDDLG 60 VQGQGYAAAA NGGIGGGGVE AVNAAAAPRQ GGRHAGHPPL PRPPPRQCPR CGSANTKFCY 120 YNNYSRTQPR YLCKACRRHW TEGGTLRDVP VGGGRKNSKR AAGGGKAGAT ASTAASAHVV 180 APAAAPPTSS SFPDLLRQML MAPATAGGGG GYSIDLTAWQ QMAAFAAPPQ AATGDVGGAV 240 GATSTAAPDA NCGGGGVQYW NGWLQDDMPG LDGSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092489	0.0	AC092489.4 Oryza sativa chromosome 10 BAC OSJNBa0066I08 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614315.1	3e-87	dof zinc finger protein 1-like
TrEMBL	A0A0E0BC73	0.0	A0A0E0BC73_9ORYZ; Uncharacterized protein
STRING	OGLUM10G14340.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-17	Dof family protein