PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G12070.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 537aa    MW: 58014.9 Da    PI: 8.1042
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G12070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.7e-2070103134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cgtt+Tp+WR+gp+g++tLCnaCG++yr+ +
  OGLUM10G12070.1  70 CRHCGTTETPQWRHGPEGHRTLCNACGMRYRSGK 103
                      *******************************976 PP
2GATA49.84.7e-16244277134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++CgttkTp WR gpd  ++LCnaCG +yr+  
  OGLUM10G12070.1 244 CAHCGTTKTPAWRLGPDSRRKLCNACGNKYRSGQ 277
                      *******************************976 PP
3GATA47.62.3e-15464498135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++CgttkTp W +gpd   +LCnaCG  yrk +l
  OGLUM10G12070.1 464 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 498
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.05E-1562125No hitNo description
SMARTSM004011.4E-1764118IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.67964100IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-1568102IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.24E-1569118No hitNo description
PfamPF003201.4E-1770103IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-11237278No hitNo description
Gene3DG3DSA:3.30.50.102.0E-12238294IPR013088Zinc finger, NHR/GATA-type
SMARTSM004017.4E-9238295IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558238274IPR000679Zinc finger, GATA-type
CDDcd002023.78E-9243275No hitNo description
PfamPF003202.3E-14244277IPR000679Zinc finger, GATA-type
SMARTSM004010.11394438IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.038394415IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-5399416IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.5E-8458512IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11458519No hitNo description
PROSITE profilePS5011410.093458494IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-10462496IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.44E-10463512No hitNo description
PfamPF003201.7E-13464498IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MVVVDGLHDG GGGDLQALLD DAVLDYVAAR GGGGGDVGEV KVEVERPSDE DAFPAVEKMA  60
TAAAAKGLQC RHCGTTETPQ WRHGPEGHRT LCNACGMRYR SGKLVPEYRP LKNPTFSPEL  120
HSNRHHRVLQ LRRRPRPGPR SAVPAPAAVA RCGGEAKEEE EELAWVSNKD AFATVETTMA  180
PSPRVVETPP EHDHRPPNIP ITSPEPHSDR PRRVVQLPRR LQEPSASTNL AHAVAATARA  240
GRECAHCGTT KTPAWRLGPD SRRKLCNACG NKYRSGQLNS TTFSQNSQEQ KKKSKSSTCS  300
RERKRSAAAT AAVVVDGLHD DAAAIADEHL DGGDLQALLD DVGLDDVAAR GGGDAGEAKE  360
EEEELEWLSN KEAFPTVETM SPAPPESRTK APVPPAGWQC RHCGSTATPL WRDGPGEAEH  420
VRKEETPPNI TPATKHRRIV DLLRCSTAPN TAATATATAV ERRCTHCGTT KTPAWLSGPD  480
SRGKLCNACG KQYRKGRLVP EYRPLNCPTF SPELHSNAHA HRRRRESPVA IAIAGEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613898.10.0GATA-type transcription factor sreA
TrEMBLA0A0E0BBC00.0A0A0E0BBC0_9ORYZ; Uncharacterized protein
STRINGOGLUM10G12070.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.19e-25GATA transcription factor 1