PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM10G11380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 13307.5 Da PI: 8.8599 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 9.6e-21 | 11 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ + +g OGLUM10G11380.1 11 TKYRGVRRRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAYAQRG 62 69********.**********8333..4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.09E-15 | 11 | 48 | No hit | No description |
Pfam | PF00847 | 9.3E-15 | 11 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.421 | 12 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 12 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-31 | 12 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-23 | 12 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.8E-12 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-12 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MEDDRSKDTA TKYRGVRRRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAYAQ 60 RGAAAVLNFP AAAAAGRGGG AGGAASGSSS SSSAQRGRGD KIEFEYLDDK VLDDLLDDEK 120 YRGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-31 | 12 | 111 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025907 | 0.0 | AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614004.1 | 5e-81 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 3e-36 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A3C573 | 2e-80 | A3C573_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM10G11380.1 | 7e-81 | (Oryza glumipatula) | ||||
STRING | ORGLA10G0102500.1 | 7e-81 | (Oryza glaberrima) | ||||
STRING | OBART10G11630.1 | 7e-81 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21883 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 8e-17 | ERF family protein |
Publications ? help Back to Top | |||
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