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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM10G09710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 36050.6 Da PI: 4.7889 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.7 | 4.1e-18 | 11 | 136 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatgkdkev 92 +G+rF P+d el+ L +k++g++ ++e ++++++i++++P +L +++++ ee+e yfFs+ + + k +ra++ g+Wk +++ OGLUM10G09710.1 11 VGVRFLPKDLELL-GILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTMQFRC--RKIVERAAQGGRWKVNNC-ETL 100 7************.67*********54555569*************743333133333347777776665..57899*********7655.344 PP NAM 93 lskkgelvglkktLvfyk..grapkgektdWvmheyr 127 + +g +vg k t+ fy+ g +++ t+W m+e++ OGLUM10G09710.1 101 EV-GGVAVGRKFTMNFYEhiGGDNDLIWTNWGMQEFT 136 44.89************5336788889********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-26 | 6 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.289 | 9 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-10 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAAPEGQNKF VGVRFLPKDL ELLGILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA 60 EDEEEEGYIY FFSTMQFRCR KIVERAAQGG RWKVNNCETL EVGGVAVGRK FTMNFYEHIG 120 GDNDLIWTNW GMQEFTRIIG PNKEFADLAV YRLYKKKITR GNGEEKPEDI AAASDGDTES 180 SMNKRRRVEA SAAAMALPPP PPPGTMMFMA DQANVASTSP LPQEWHGQFA NSAAAAPSPS 240 GCWPWAPPPT PSAVEPFSFW ASASAAIPPA ADHYHPPPPP QGGEYYSRHG AFSVAPVPAS 300 ACSTSPLPAA GTEGSYSQQQ EPPCELMEF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 187 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110942 | 0.0 | AK110942.1 Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876515.1 | 0.0 | uncharacterized protein LOC4348617 | ||||
TrEMBL | A0A0E0BAH0 | 0.0 | A0A0E0BAH0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM10G09710.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19206 | 9 | 9 |