PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G09700.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 348aa    MW: 37023 Da    PI: 5.0402
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G09700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.41.6e-1177955127
              NAM  55 ek.ewyfFskrdkkya...tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      e+  +yfFs+ + k+a   ++k + ra++ g+Wka   + ++++ ++  vg k ++ fy     kg++t+W mhe+ 
  OGLUM10G09700.1   7 ENgYIYFFSTIEFKAAkpkQKKLPWRAAQGGRWKAVLGSSQMVEVGDVPVGRKLSMEFY----VKGVRTNWGMHEFV 79 
                      332559**9988877722234455699*******87666666666**************....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.933199IPR003441NAC domain
SuperFamilySSF1019416.41E-15797IPR003441NAC domain
PfamPF023655.6E-51178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MYAEDEENGY IYFFSTIEFK AAKPKQKKLP WRAAQGGRWK AVLGSSQMVE VGDVPVGRKL  60
SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LVVYRLHKLW TNGEEKPGDL AADGAAKSTN  120
QSGQASAADY YQTYQNAVSQ AYAYAPPYVL QPGWSQGYPY DVAAAPPTAP WPVCWAPPSA  180
PGSYDCCYAS TFSRPPPPPP IAASTLDKAP MTSTDHGAST NTSAATPAAN KKPPPPVAAT  240
ATTLGKIKGE VKGKAPTTTS TDHAGPTNTS APPAANYQPP PLQGTQHVFA SGVVVGHEDE  300
EGYLVVDEVN TWRNTQQLVL EDDDDDDDGD GRAASAGAGE GGTSASRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.10.0uncharacterized protein LOC4348616
TrEMBLA0A0E0BAG90.0A0A0E0BAG9_9ORYZ; Uncharacterized protein
STRINGOGLUM10G09700.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-06NAC domain containing protein 3