PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G09280.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 435aa MW: 45948.2 Da PI: 8.4982

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G09280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	89	148	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ OGLUM10G09280.1 89 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNA 148 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-37	76	146	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	91	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MGECRGGGGD GLIKLFGKTI PVQPDAKDVQ QHSGSSSSST ESDVQETAAV AVADPSPRSE 60 VVDGESPPQP GGGAGSHQQQ QKEMKLKKPD KILPCPRCSS MDTKFCYFNN YNVNQPRHFC 120 KHCQRYWTAG GAMRNVPVGA GRRKNKNATA AAHFLHRVRA CAAAAAMPAA PHDATNATVL 180 SFGGGGGGHD APPVTLDLAD KMTRLGKEGL VAHARNADAA AACSEVSSNR DDEQIGNTVA 240 KPANGLQQHP PPPHHHHHSA MNGGGIWPYY TSGIAIPIYP AAPAYWGCMI PPPGAWSLPW 300 PATVQSQAIS SSSPPTSATP SVSSFTLGKH PREGGDHEAR DHHGNGKVWV PKTIRIDNAD 360 EVARSSIRSL FAFRGGDKAD DNNDDDGTGV HKLATTVFEP KRDGKTAKHP AITSLPRLHT 420 NPVALTRSAT FQEGS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MGECRGGGGD GLIKLFGKTI PVQPDAKDVQ QHSGSSSSST ESDVQETAAV AVADPSPRSE  60
VVDGESPPQP GGGAGSHQQQ QKEMKLKKPD KILPCPRCSS MDTKFCYFNN YNVNQPRHFC  120
KHCQRYWTAG GAMRNVPVGA GRRKNKNATA AAHFLHRVRA CAAAAAMPAA PHDATNATVL  180
SFGGGGGGHD APPVTLDLAD KMTRLGKEGL VAHARNADAA AACSEVSSNR DDEQIGNTVA  240
KPANGLQQHP PPPHHHHHSA MNGGGIWPYY TSGIAIPIYP AAPAYWGCMI PPPGAWSLPW  300
PATVQSQAIS SSSPPTSATP SVSSFTLGKH PREGGDHEAR DHHGNGKVWV PKTIRIDNAD  360
EVARSSIRSL FAFRGGDKAD DNNDDDGTGV HKLATTVFEP KRDGKTAKHP AITSLPRLHT  420
NPVALTRSAT FQEGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021893	0.0	AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615013.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0BAA8	0.0	A0A0E0BAA8_9ORYZ; Uncharacterized protein
STRING	OGLUM10G09280.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	5e-39	cycling DOF factor 1