PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G09010.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 494aa    MW: 54035.3 Da    PI: 5.992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G09010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.75.4e-2421372127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkdk 90 
                       +G+ F P+d el     +k v g+    l++v+++++i++++P  L+ + + +ee+  +yfF +r+ +++  +++r++r++k g+Wka+g +k
  OGLUM10G09010.1   2 LVGCYFVPKDLELFAILRCKLVCGQLpGALNNVFEHIRILEFHPALLHeTYIGKEEDgYIYFFNRRQFATKagNKRRPTRVAKGGTWKASGGSK 95 
                      68************665555555555334456799************84455554443559999998655533788999*************** PP

              NAM  91 evlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      +v sk  +g ++g k t++fy    + ++++ kt+W mhe++
  OGLUM10G09010.1  96 TVRSKkvGGIDIGQKLTMMFYerrFEGDRNPIKTNWGMHEFT 137
                      ***99888889**********43312456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.8431158IPR003441NAC domain
SuperFamilySSF1019416.8E-292145IPR003441NAC domain
PfamPF023656.2E-123137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MLVGCYFVPK DLELFAILRC KLVCGQLPGA LNNVFEHIRI LEFHPALLHE TYIGKEEDGY  60
IYFFNRRQFA TKAGNKRRPT RVAKGGTWKA SGGSKTVRSK KVGGIDIGQK LTMMFYERRF  120
EGDRNPIKTN WGMHEFTKII DDSKNQKPGR STKRIGERCR RGVDEPSTSS ALPPPTPPRP  180
LPDMAGPSSA TPLLPLQLPD MAGQSSATPL LPLQLLGLAG SSSAMSLPVL QLPGMAGSSS  240
AMPLQLSLPG LAGEMMSMAD QANMASTSQA STPSSELLQD WYDEFEITYG AVTPPSPSTI  300
SWEAPQSSPM GWWPSPNGGL VQHDGYLRMA ADPTWYMLEH LLPTAAIPPE LMTPKKSSPA  360
PPPAVDHHHR LSPPHDAAGS NYNHPKLAGY NGGIQAQHEN QHHPQEPQPA LLVDGEDGYG  420
AMADSNDTQL GGTEFDTERI AEMDNTVLKY NEVFPDDDEV VAAPMMIDSG AMVQRDVMET  480
THSTIRALFR IDLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0BA780.0A0A0E0BA78_9ORYZ; Uncharacterized protein
STRINGOGLUM10G09010.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.13e-10NAC family protein