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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM10G08720.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 161aa MW: 17368.4 Da PI: 11.3892 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 44.2 | 6e-14 | 87 | 153 | 66 | 127 |
NAM 66 kkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 +k+++++r+ r+++ g+Wka+ ++k+v sk +g +vg k t+vfy + ++++ kt+W mhe++ OGLUM10G08720.3 87 TKARNKRRPMRVADGGTWKASDESKTVRSKkvGGIDVGQKFTMVFYerrFEGDQNPIKTNWGMHEFT 153 46678899********************99888899**********43313456678********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.692 | 17 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-7 | 85 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.45E-16 | 87 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGTAAAAVEA TATMGSGRGR RRWCRSTART GTACLSASTS SPRTWSSSPS SCASSSEERS 60 PAPSTTSSSI SGYLNSTPPS SMRQFATKAR NKRRPMRVAD GGTWKASDES KTVRSKKVGG 120 IDVGQKFTMV FYERRFEGDQ NPIKTNWGMH EFTKIIPGTK N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122144 | 1e-129 | AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence. | |||
GenBank | AP014966 | 1e-129 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 7e-42 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | A0A0E0BA43 | 1e-112 | A0A0E0BA43_9ORYZ; Uncharacterized protein | ||||
STRING | OBART10G08900.1 | 2e-45 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 4e-07 | NAC family protein |