PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G08720.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 311aa    MW: 32904.1 Da    PI: 5.9362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G08720.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.55e-1025676125
              NAM  76 ratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmhe 125
                      r+++ g+Wka+ ++k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe
  OGLUM10G08720.2   2 RVADGGTWKASDESKTVRSKkvGGIDVGQKFTMVFYerrFEGDQNPIKTNWGMHE 56 
                      78899*************99888899**********43313456678*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.068176IPR003441NAC domain
SuperFamilySSF1019412.35E-11257IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRVADGGTWK ASDESKTVRS KKVGGIDVGQ KFTMVFYERR FEGDQNPIKT NWGMHERKED  60
TEPVNAAATV SSTDEPSTPA ALPLPTPPPR PLPDMAGSSS ATSLLPLQLP GLAGSSSTMP  120
LALPLQLPGL PRSSSVMSLP GLAGEMTSMG HGETGEHGLD ASTPSSELPQ DWYDEYEVAY  180
GAVAPPAPST IIWAALPSSP TAWWPPSNGG PMQHDGYLGM ADPASYTLEH LLPTAAIPPE  240
PMAPPKSSPA PPPAVGHHRL SPPHDAAGNY DHLELANYGG VRRSTSIIII IHRSLRMART  300
ATVPWPTATH S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876799.11e-113LOW QUALITY PROTEIN: uncharacterized protein KIAA1522
TrEMBLA0A0E0BA410.0A0A0E0BA41_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BA420.0A0A0E0BA42_9ORYZ; Uncharacterized protein
STRINGOGLUM10G08720.10.0(Oryza glumipatula)