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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM10G08700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 532aa MW: 57396.1 Da PI: 4.6798 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.6 | 3.3e-25 | 36 | 172 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 +p+G F P+d el +k v+g+ l++v+++++i++++P L+ + + +ee+ +yfFskr+ +++ +++r++r+tk g+Wka+g + OGLUM10G08700.1 36 MPVGWYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEIHPALLHeTYIGNEEDgYIYFFSKRQFTTKagNKRRPTRVTKGGMWKASGGS 129 699************7766666666653334566999***********8445555555356****9986555337889**************** PP NAM 90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 k++ sk +g +vg k t+vfy + ++++ kt+W mhe++ OGLUM10G08700.1 130 KTLRSKkvGGIDVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 172 ***998888899**********43312456678********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-34 | 30 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.047 | 36 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-13 | 37 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MAEQPPEGRG GGDNNNGKRK GKEKVVPEYG KNRHGMPVGW YFVPKDLELF AILRCKLVRG 60 QLPGALNNVF EHIRILEIHP ALLHETYIGN EEDGYIYFFS KRQFTTKAGN KRRPTRVTKG 120 GMWKASGGSK TLRSKKVGGI DVGQKLTMVF YERRFEGDRN PIKTNWGMHE FTKIIDGTKN 180 QLEDLAVYRL YKIKRKEDEE PSNTAAAASS TDEPSTSSAL PPPTPPRPLP DMAGPSSATP 240 LLPLQLPGLA GSSSAMSLPA LQLPGMAGSS SAMPLPPLSL PGLAGGMMSM ADQANMASTS 300 QVSTPSSELL QDWYDEFEIT YGAVAPPSPS TISWVAPQSS PTGWWPSPNG GPVQHDGYLG 360 MAADPTSYML ENLLPTAAIP PEPMMPPTSS PAPPPAVDHH HRLSPPHDAA GSNYNYPELA 420 DYNGGVQAQH EHQYHPQEPQ ASLVDAEDGY SAMAGGDDAQ LGGAELDTER IAEMVNHIMD 480 GEFEFKFEDN TVLKYNEVFP DNDEVVAAPM MIDGGGDGDG ANGGDGDDPF DN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092388 | 0.0 | AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence. | |||
GenBank | AC122144 | 0.0 | AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613639.1 | 0.0 | NAC transcription factor NAM-B2 | ||||
TrEMBL | A0A0E0BA39 | 0.0 | A0A0E0BA39_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM10G08700.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 7e-13 | NAC family protein |