PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G08400.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 318aa    MW: 33678.7 Da    PI: 4.8806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G08400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19114164256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr ++ +g+W+AeIrdp+    r  r++lg+f tae Aa+a++aa+++l+g+
  OGLUM10G08400.1 114 RFRGVRKRP-WGKWAAEIRDPV----RgVRVWLGTFPTAESAARAYDAAARRLRGA 164
                      69*******.**********63....56**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-13114163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-31114172IPR001471AP2/ERF domain
PROSITE profilePS5103224.395114171IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-21114171IPR016177DNA-binding domain
SMARTSM003804.4E-35114177IPR001471AP2/ERF domain
CDDcd000188.30E-16114148No hitNo description
PRINTSPR003679.2E-11115126IPR001471AP2/ERF domain
PRINTSPR003679.2E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSQTQSNSNQ THLPTPNPSS ARAMCGGAIL ADLIPSPPSG GHTNKNKRWR ISDDEDFEAA  60
FEEFDAGDDD SDSESEEVDE YDVVVDDDDS EDGVVVLPPP PPPVIPHERH GARRFRGVRK  120
RPWGKWAAEI RDPVRGVRVW LGTFPTAESA ARAYDAAARR LRGAKAKPNF PSAPPPSAAA  180
HRRKKRRAHA ATRSPSSPPA TSEVTAASAS ASSDVPAPAF ASFVGEPGHG GAKSMPTTSH  240
TSQPAPPATV ASENVDDPEV FDPYDVHGGL ASYFAGGAYE SLESLFAHGG DSAAVDQAAS  300
DHWPAALWSF ADDGSFCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19115171663ATERF1
3gcc_A4e-19115171663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1102690.0AK110269.1 Oryza sativa Japonica Group cDNA clone:002-163-C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613362.21e-164ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0BA000.0A0A0E0BA00_9ORYZ; Uncharacterized protein
STRINGOGLUM10G08400.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-15ERF family protein