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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM10G07770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1052aa MW: 117516 Da PI: 5.9809 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179.6 | 3.9e-56 | 25 | 142 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f OGLUM10G07770.1 25 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 118 45559***************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhyle+k OGLUM10G07770.1 119 QRRTYWMLEEDFMHIVLVHYLETK 142 *********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.157 | 21 | 147 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-77 | 24 | 142 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.7E-50 | 27 | 140 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.8E-6 | 472 | 558 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00553 | 472 | 560 | No hit | No description |
Pfam | PF01833 | 1.9E-8 | 473 | 551 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.96E-18 | 473 | 559 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.8E-15 | 665 | 768 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.2E-16 | 667 | 770 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.03E-11 | 668 | 766 | No hit | No description |
PROSITE profile | PS50297 | 15.433 | 674 | 768 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 707 | 739 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 5.31E-8 | 866 | 920 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.37 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 870 | 899 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.024 | 871 | 890 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0059 | 892 | 914 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 894 | 917 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.1E-4 | 895 | 914 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1052 aa Download sequence Send to blast |
MAADARRFAV VPQLGEHNAD IAQILKEAQQ RWLRPAEICE ILKNYKSFRI APEPPNRPQS 60 GSLFLFDRKV LRYFRKDGHN WRKKKDGKTV KEAHERLKSG SIDVLHCYYA HGEENENFQR 120 RTYWMLEEDF MHIVLVHYLE TKKSLNPHCI VLCDYELQGG KSRTRGNNDM HQAAVMDSPL 180 SQLPSQTIDG ESSLSGQFSE YEEAESGGTG YHSFTQMQQQ QNGIGPVTDA SMFSSRVSAS 240 SIGNYQGQHA MGHTTNFYSS SQHDSPLVLS DPNLELENNG HESLWNGVMK PDEGTVQMTH 300 LQPPVHPEQG MFTTEGQGVE YLTFDEVYSD GLSLKDIGAA GADVEPFWQF SSNSYLTEAI 360 AFQLSSATAD ISATENSVQQ NDGSLGAAIG FPFLKTQSSN LSDILKDSFK KSDSFTRWMS 420 KELLDVEDSQ IQSSSGAYWN TEEADSIIEA SSREPLDQFT VAPMVLQDQL FSIVDFSPSW 480 TYAGSKTKVL VTGRFLHANE VTERCKWSCM FGEVEIQAEI SADGTLRCYS PPHKPGRVPF 540 YVTCSNRLAC SEVREFEFRP SDSQYMDAPS PLGATNKVYF QIRLDNLLSL GPDVYQATIT 600 NPSKEMIDLS KKISSLLANN DEWSKLLKLA DDNEPLSHDQ QDQYAENLIK EKLHVWLLHK 660 VGNGGKGPSV LDDEGLGVLH LAAALGYDWA IRPTVTAGVN INFRDFHGWT ALHWAAFCGR 720 ERTVVALIAL GAAPGALTDP HPNYPAESTP ADLASANGHK GISGFLAESS LTSHLQALNL 780 KEANMSEISG LPGIGDITER NASQPAIGDS LGAVRNAAQA AARIYQVFRV QSFQRKQAVQ 840 YEGDKGGISD EHTLSLLSMK PSKSGQLDPL HAAASRIQNK YRGWKGRKEF LLFRQRIVKI 900 QAHVRGHQVR KHYRKIVWSV GIVEKVILRW RRRRAGLRGF RPTEGAIESS SGGTSSNLVT 960 DKPAGDDYDF LQEGRKQTEE RLQKALARVK SMVQYPEARD QYQRILNVVS KMQESQTVQE 1020 KILDESTEMD EGDFMSEFKE LWDDDTPLPG YF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105116 | 0.0 | AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614397.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X2 | ||||
TrEMBL | A0A0E0B9S2 | 0.0 | A0A0E0B9S2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM10G07770.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |