|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
OGLUM09G20110.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
Trihelix |
Protein Properties |
Length: 339aa MW: 36509.1 Da PI: 6.9497 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM09G20110.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 37.4 | 6.8e-12 | 25 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...tse 74
+W+++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + +++
OGLUM09G20110.1 25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaaaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAAG 118
5*******************************9999999999**********9977778899******************99888776332466 PP
trihelix 75 ssstcpyfdqle 86
+ ++++f +++
OGLUM09G20110.1 119 AGPSWRFFARMD 130
678999999997 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDALPDAADA APLAAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60 EVSAHCAMEN AAAAAATGKP GSSTAKTPNQ CKNKIESMKK RYRAESAAAA RAGPAAAGAG 120 PSWRFFARMD GLLKGPAGSG QPQAELSNSI DLRAPPPAKV EVDVDADFVS QLADAGPGAL 180 SELVSAYANG SIQEKLDKVE NSGQVEGRAA ESDVNVSSPR IKEANEDAEE VDKVWDMSKK 240 RKNTEFDIAK SIELLASSFL KIERARMDLY RETERMRVEA EIKKGEMELK RTEIMAKTHL 300 QIAKLFAKRL KECSSKTGGS SSVTAEVDNH AKKGENGSG
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G54390.1 | 1e-47 | sequence-specific DNA binding transcription factors |