PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G19240.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 888aa MW: 97379.5 Da PI: 6.6782

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G19240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	574	624	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OGLUM09G19240.1 574 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 624 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	563	644	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-25	576	624	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.7E-20	781	877	No hit	No description
SMART	SM00666	8.0E-18	791	874	IPR000270	PB1 domain
PROSITE profile	PS51745	18.398	791	874	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.9E-24	791	872	No hit	No description
CDD	cd06407	2.42E-43	792	872	No hit	No description
Pfam	PF00564	4.3E-15	792	872	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MMCSSLLPTP CNPNAGKSST KFIPGLPVSC TPLAQDVQRN SEGNLTCMEE GDPQPSISLA 60 RTPSEGAAAA VDLDLLEQLL SADNAWLEVA ANTSRSPNFF ATPSNCLTDA SVATTTPANS 120 WWIQPSGAST SVRERFDQAL AYIRETQSDA NVLVQLWVPV KGNDGQLVLT TSGQPFTLDQ 180 RSNSLIQFRE VSTKYQFSAD VASGSSPGLP GRVFIGRLPE WSPDVRYFTS YEYPRISHAQ 240 YLDVHGTMGL PVFERGNSSC LGVIELIMTK QKLNFTSELN TICSALQAVN LTSTEVSSIP 300 RTKLNSASYK DALPEILEVL RAACITHKLP LAQTWVTCAQ QGKRGSRHSD ENYKYCISTI 360 DAACYVNEPQ MQSFHEACSE HHLLQGQGVA GKAFTTNQPC FLPDIGSSTK LEYPLSHHAK 420 IFNLKGAVAI RLRCTRTGIA DFVLEFFLPT DCEVLEEQKA VLDSLSGTMR SVCQTLRVVT 480 DKEMEDEAMR EMNELNSFSP QGKNKVEELS FGDNTREDRE ETSWTTLVGT SQKGSDLAEL 540 HTHGMLSHGG QGSSQAGDQT SKEGSKVKRR TKTEKTVSLQ VLRQYFAGSL KDAAKSLGVC 600 PTTLKRICRQ HGINRWPSRK IKKVDHSLRK LQQIIDSVHG AETAFQLNTL YKDLTNTSVS 660 SDNNLSGSVT VPLANQNNLD FEKHQHHRLS SNIPSTSLSH SSCSQSSDSS PSCSGGATKH 720 SPQVGADQVR LGCLPQHSPV QTLHTEAASI NEHFSGQEAP IDLLQDVAEK ANGEQHMSQS 780 PSSPKQTANV GMRVKVTFGS EKVRFRLKPE CDFQELKQEI SKRLSIVDMN SLIVKYLDDD 840 SEWVLMTCDA DLHECFHVYK LADIQTIKIS VHLAASPTRI TIGHTGFS

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MMCSSLLPTP CNPNAGKSST KFIPGLPVSC TPLAQDVQRN SEGNLTCMEE GDPQPSISLA  60
RTPSEGAAAA VDLDLLEQLL SADNAWLEVA ANTSRSPNFF ATPSNCLTDA SVATTTPANS  120
WWIQPSGAST SVRERFDQAL AYIRETQSDA NVLVQLWVPV KGNDGQLVLT TSGQPFTLDQ  180
RSNSLIQFRE VSTKYQFSAD VASGSSPGLP GRVFIGRLPE WSPDVRYFTS YEYPRISHAQ  240
YLDVHGTMGL PVFERGNSSC LGVIELIMTK QKLNFTSELN TICSALQAVN LTSTEVSSIP  300
RTKLNSASYK DALPEILEVL RAACITHKLP LAQTWVTCAQ QGKRGSRHSD ENYKYCISTI  360
DAACYVNEPQ MQSFHEACSE HHLLQGQGVA GKAFTTNQPC FLPDIGSSTK LEYPLSHHAK  420
IFNLKGAVAI RLRCTRTGIA DFVLEFFLPT DCEVLEEQKA VLDSLSGTMR SVCQTLRVVT  480
DKEMEDEAMR EMNELNSFSP QGKNKVEELS FGDNTREDRE ETSWTTLVGT SQKGSDLAEL  540
HTHGMLSHGG QGSSQAGDQT SKEGSKVKRR TKTEKTVSLQ VLRQYFAGSL KDAAKSLGVC  600
PTTLKRICRQ HGINRWPSRK IKKVDHSLRK LQQIIDSVHG AETAFQLNTL YKDLTNTSVS  660
SDNNLSGSVT VPLANQNNLD FEKHQHHRLS SNIPSTSLSH SSCSQSSDSS PSCSGGATKH  720
SPQVGADQVR LGCLPQHSPV QTLHTEAASI NEHFSGQEAP IDLLQDVAEK ANGEQHMSQS  780
PSSPKQTANV GMRVKVTFGS EKVRFRLKPE CDFQELKQEI SKRLSIVDMN SLIVKYLDDD  840
SEWVLMTCDA DLHECFHVYK LADIQTIKIS VHLAASPTRI TIGHTGFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005679	0.0	AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612115.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A0E0B655	0.0	A0A0E0B655_9ORYZ; Uncharacterized protein
STRING	OGLUM09G19240.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein