PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G17020.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 377aa MW: 40374.2 Da PI: 6.6549

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G17020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	180	238	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + l++e+ OGLUM09G17020.1 180 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTEN 238 9*********************************************9999888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-16	176	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	178	241	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-10	180	235	No hit	No description
SuperFamily	SSF57959	1.2E-10	180	231	No hit	No description
Pfam	PF00170	2.5E-9	180	238	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.70E-23	181	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MNREKSPIPG DGGDGLPPQA TRRAGPPAAA EYDISRMPDF PTRNPGHRRA HSEILSLPED 60 LDLCAAGGGD GPSLSDENDE ELFSMFLDVE KLNSSCGASS EAEVESSSAG AAAAAAAAAA 120 AAAHGAKPKH QHSLSMDESL SIKAEELVGA SPGTEGMSSA EAKKAVSAAK LAELALVDPK 180 RAKRIWANRQ SAARSKERKM RYIAELERKV QTLQTEATTL SAQLALLQRD TSGLTTENSE 240 LKLRLQTMEQ QVHLQDALND TLKSEVQRLK VATGQMANGG GMMMNFGGMP HQFGGNQQMF 300 QNNQAMQSML AAHQLQQLQL HPQAQQQQVL HPQHQQQQPL HPLQAQQLQQ AARDLKMKSP 360 MGGQSQWGDG KSGSSGN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MNREKSPIPG DGGDGLPPQA TRRAGPPAAA EYDISRMPDF PTRNPGHRRA HSEILSLPED  60
LDLCAAGGGD GPSLSDENDE ELFSMFLDVE KLNSSCGASS EAEVESSSAG AAAAAAAAAA  120
AAAHGAKPKH QHSLSMDESL SIKAEELVGA SPGTEGMSSA EAKKAVSAAK LAELALVDPK  180
RAKRIWANRQ SAARSKERKM RYIAELERKV QTLQTEATTL SAQLALLQRD TSGLTTENSE  240
LKLRLQTMEQ QVHLQDALND TLKSEVQRLK VATGQMANGG GMMMNFGGMP HQFGGNQQMF  300
QNNQAMQSML AAHQLQQLQL HPQAQQQQVL HPQHQQQQPL HPLQAQQLQQ AARDLKMKSP  360
MGGQSQWGDG KSGSSGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102795	0.0	AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612692.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	0.0	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A0E0B5C3	0.0	A0A0E0B5C3_9ORYZ; Uncharacterized protein
STRING	OGLUM09G17020.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	5e-62	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]