PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G14350.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 1096aa    MW: 118226 Da    PI: 7.7189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G14350.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09925973355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OGLUM09G14350.4 925 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 973
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.8E-1058211IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.85377111IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.93112142IPR002885Pentatricopeptide repeat
PfamPF015350.36116138IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.835143173IPR002885Pentatricopeptide repeat
PfamPF015350.061145172IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0016145174IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.446174204IPR002885Pentatricopeptide repeat
PfamPF130412.3E-9174220IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-8176210IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.568210244IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.16245275IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.8E-10246304IPR011990Tetratricopeptide-like helical domain
PfamPF015350.2250270IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.652277311IPR002885Pentatricopeptide repeat
PfamPF130411.8E-11277324IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-6280312IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.385312347IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.1E-5314349IPR002885Pentatricopeptide repeat
PfamPF128541.4E-6344375IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.901348378IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.9E-4352375IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.8E-10382430IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.555414448IPR002885Pentatricopeptide repeat
PfamPF144325.0E-40450575IPR032867DYW domain
SuperFamilySSF474592.36E-16920990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-10920977No hitNo description
PROSITE profilePS5088815.65922972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16923989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6925973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11928978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1096 aa     Download sequence    Send to blast
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ  60
LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI  120
HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT  180
IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLVSVISA ITYLGALAQG LWAHAYVCRK  240
GIEVEERLSS ALINMYSKCG CIEGAVHVFE NLGAQMNVDT WNAMLAGFTA NGCSEKALEL  300
FARMEITGLV PNKITFNTVL NACSHGGFVE EGMGCFEIMT KVYGIEPDIA HYGCMVDLFC  360
RAGLFDKAEK MIQMMPMKPD AAVWKALVGA CKTHRNFELG RKAGHMLIEA APNDHAGYVL  420
LSNIYALDGN WTGVHKVRKL MLDRGVQKVP GSSSIEIDGV IHEFISGDKS HSSKEDIYEM  480
LSEMCQQLKV AGYVPDTSHV LLDIDDEDVK ESSLALHSEK LAIAFGLIST APGTPIRIAK  540
NLRVCGDCHN AVKLLSKIYG RCIIVRDANR FHHFREGSCS CGDFWNPLLL LAPDGPLPTG  600
AGRSTGKCLV SRPASAAVHN TGKRRACPVF SKGATNEKKR RAGRDRRQAL LKERKLGIRS  660
LEPRLGDSMD MSESSEKGME SNASSGPGNG IPVEWQSQFS SAFACQPSVA AQHQQHAMMD  720
SFAAASAGLW ASSDVVSAMS SAAPPRGAGF LAPVPGFLQQ GLGHFPVDSG FIERAARSTC  780
FGGGMMAGGP YGAADQAMGD AFGGTAEGLM DHHRNVGNDK AEEFAGNGHD EVPSSEVAGG  840
DCFSKGSDSK KRRRPNEVMG TDQVHSSNLP SDSANESVHS KDKGEESSPA TTNGGKSKGK  900
GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV  960
MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK DLLRFPGVPS SSIGFSPEMM  1020
HPQLQLSQPG LIHGGTAGMA NPDVFRRIIQ AQLGAKDGSQ MPHSLNGSFS DVSQMAYPSL  1080
GSQDLSIRPS QDGFQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-436241114338PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1622640KRRACPVFSKGATNEKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874430.0AK287443.1 Oryza sativa Japonica Group cDNA, clone: J043016D20, full insert sequence.
GenBankAP0061690.0AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612413.10.0pentatricopeptide repeat-containing protein At5g48910 isoform X1
TrEMBLA0A0E0B4A30.0A0A0E0B4A3_9ORYZ; Uncharacterized protein
STRINGOGLUM09G14350.40.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-65bHLH family protein