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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM09G13230.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 274aa MW: 29203.8 Da PI: 6.2807 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM09G13230.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 63.3 | 5e-20 | 129 | 179 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
y+GVr ++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+++++g+
OGLUM09G13230.1 129 VYRGVRHRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAALEFRGA 179
69****888.**********82....48*************************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001944 | Biological Process | vasculature development |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0050832 | Biological Process | defense response to fungus |
GO:0051301 | Biological Process | cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MTKKVIPAMA AARQDSCKTK LDERGGSHQA PSSARWISSE QEHSIIVAAL RYVVSGCTTP 60 PPEIVTVACG EACALCGIDG CLGCDFFGAE AAGNEEAVMA TDYAAAAAAA AVAGGSGGKR 120 VRRRRKKNVY RGVRHRPWGK WAAEIRDPRR AVRKWLGTFD TAEEAARAYD RAALEFRGAR 180 AKLNFPCSEP LPMPSQRNGN GGEAVTAATT TAEQMTPTLS PCSADAEETT TPVDWQMGAD 240 EAGSNQLWDG LQDLMKLDEA DTWFPPFSGA ASSF
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 118 | 126 | KRVRRRRKK |
Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK067195 | 0.0 | AK067195.1 Oryza sativa Japonica Group cDNA clone:J013098P10, full insert sequence. |
GenBank | AP005891 | 0.0 | AP005891.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1045B05. |
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
GenBank | EU622934 | 0.0 | EU622934.1 Oryza sativa Indica Group EATB (EATB) mRNA, complete cds. |
GenBank | KP212899 | 0.0 | KP212899.1 Oryza sativa Indica Group cultivar IR64-Sub1 AP2 domain containing protein (EATB) gene, complete cds. |
GenBank | KP212900 | 0.0 | KP212900.1 Oryza sativa Indica Group cultivar PS-2 AP2 domain containing protein (EATB) gene, complete cds. |
Publications
? help Back to Top |
- Matsuo M,Oelmüller R
REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] - Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] - Bahieldin A, et al.
Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] - Kong X, et al.
PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]
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