PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G11780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 285aa    MW: 31334.3 Da    PI: 5.2231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G11780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192473255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  OGLUM09G11780.1 24 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 73
                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.46E-332482No hitNo description
Gene3DG3DSA:3.30.730.109.1E-332482IPR001471AP2/ERF domain
PROSITE profilePS5103223.9332481IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-222482IPR016177DNA-binding domain
SMARTSM003801.2E-362487IPR001471AP2/ERF domain
PfamPF008474.1E-122573IPR001471AP2/ERF domain
PRINTSPR003671.5E-112536IPR001471AP2/ERF domain
PRINTSPR003671.5E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLTTKLVQHD GPTARSAKRK RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYNTAEEA  60
ARAYDAEARK IRGKKAKVNF PDEPAVAQKL SLKQNAAKQE KLAPPLKTCG DDAFFQLNSS  120
DNDLFAMLAK VPAKPAEPVD LMPPVKPLAS TETFEMNMLS DTSSNSFGSS DFGWEDDTLT  180
PDYTSVFVPN AAMPAYGEPA YLTGGAPKRM RNNYGIAVPQ GNGMPNLAQN MPTFDPEMKY  240
LPLPYVESSS DESMDNLLQN DATQDGASNE GIWSLDELLM AAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-202381160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-202481563ATERF1
3gcc_A2e-202481563ATERF1
5wx9_A5e-2023831374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1045760.0AK104576.1 Oryza sativa Japonica Group cDNA clone:006-307-A07, full insert sequence.
GenBankAK1047230.0AK104723.1 Oryza sativa Japonica Group cDNA clone:001-038-B05, full insert sequence.
GenBankAK1116900.0AK111690.1 Oryza sativa Japonica Group cDNA clone:J023008G03, full insert sequence.
GenBankAP0055510.0AP005551.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1081_G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAY8313920.0AY831392.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankDQ4171990.0DQ417199.1 Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds.
GenBankEU8372560.0EU837256.1 Oryza sativa Japonica Group clone KCS059H07 EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0B3C80.0A0A0E0B3C8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ESI40.0A0A0E0ESI4_9ORYZ; Uncharacterized protein
STRINGOGLUM09G11780.10.0(Oryza glumipatula)
STRINGORUFI09G12180.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.23e-28related to AP2 12