PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G07930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 365aa MW: 37849.8 Da PI: 5.4676 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.4 | 8.3e-37 | 75 | 174 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ael OGLUM09G07930.1 75 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAEL 168 7********************************************************************************************* PP DUF260 95 allkee 100 a+++++ OGLUM09G07930.1 169 AAVQHH 174 ***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.79 | 74 | 175 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-33 | 75 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG 60 VGGGGGGGGV GQSQACAACK YQRRKCNADC PLARYFPADE QRRFLNAHHL FGVSKIQKTL 120 RDTPPELHAD AMQALTFEAN ARASDPVGGA ARVVVELCRQ YEMLHAELAA VQHHLKLCRQ 180 QHAAAAAAAA NDPLVANVNP LADPAAEMLF AGAVVPNQND DAMVDAFYAD QQTAGDGDQE 240 QYLVKDEALA AQPPPQQPYE YLNYGTAGDE GSSHAWYTGN GGDADASPPM GLSDQLQQCQ 300 IGAAPPFDVK PELPATMEHG GSVFVEQPEQ KILPAAGSSS SAAAHCQLEL GCSSNAWKVG 360 THVIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-20 | 71 | 175 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-20 | 71 | 175 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611163.2 | 0.0 | protein IAL1 | ||||
TrEMBL | A0A0E0B221 | 0.0 | A0A0E0B221_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G07930.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18293 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 2e-29 | LOB domain-containing protein 7 |