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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G05550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 385aa MW: 40162.2 Da PI: 7.6722 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.6e-05 | 188 | 207 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ OGLUM09G05550.1 188 FSCAVCNKTFNRFNNMQMHM 207 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.0002 | 279 | 301 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ OGLUM09G05550.1 279 YACRRCGKRFAVRGDWRTHEKNC 301 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.98E-5 | 183 | 209 | No hit | No description |
PROSITE profile | PS50157 | 10.055 | 188 | 215 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 188 | 207 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.64 | 188 | 210 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 190 | 210 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 242 | 274 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.14E-6 | 265 | 299 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 265 | 299 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 58 | 279 | 299 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.704 | 279 | 299 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MHPHLYQSHH HHQHVAPPTK HGGGAGGEED DQSMLLLSLW PPGHSSHHHQ HHHHGAASSS 60 ACSSASISAA AVAAAHSGGG GGGHGVAAAA SSWFNPSHYH GGGGGGGGFL FQEQQEPNVS 120 ISLSIAPPCG VSGGNAAAMA AAGSFATSPL PQQPVASSAV ATAAGGGQAP SQYWIPSAAE 180 ILVGSTQFSC AVCNKTFNRF NNMQMHMWGH GSQYRKGSES LRGAITVGGA APPASLMRLP 240 CYCCAEGCRN NVEHPRARPL KDFRTLQTHY RRKHGARPYA CRRCGKRFAV RGDWRTHEKN 300 CGKLWFCVCG SDFKHKRSLK DHVRSFGGGH APHIVESSST GAGGGGGCGG AGADDDDDEY 360 YDDDDDTVSL SRATSAHDDA DMIVV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876264.1 | 0.0 | zinc finger protein WIP6 | ||||
TrEMBL | A0A0E0B159 | 0.0 | A0A0E0B159_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G05550.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11306 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 8e-96 | C2H2-like zinc finger protein |