|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
OGLUM09G04680.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
ERF |
Protein Properties |
Length: 235aa MW: 26376 Da PI: 8.8587 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM09G04680.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 114 | 161 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
y+G+r+++ +grW++eIrdp+ + r++lg+f+tae+Aa+a++ ++++
OGLUM09G04680.1 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 161
9*******.**********75....44*******************8777766 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MRRRVSSSSS SSSSSSPARH HKVRRSRRKL AVDEDWEAAF REFLSRDHDD DDHDHDGQHV 60 VVAPLIRGSD KCVHGHEVVA STVGGGASGG RRRADDDDGE RRRRRRREKR SYPYRGIRQR 120 PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGGNAKTNFP PSPPTPPPPP 180 PPEKPAAERS PSTTPPTTTE DSGDSRILIE CCSDDLMDSL LAAFDMTTGD MRFWS
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 90 | 106 | RRRADDDDGERRRRRRR |
2 | 99 | 107 | ERRRRRRRE |
3 | 100 | 106 | RRRRRRR |
4 | 100 | 107 | RRRRRRRE |
5 | 101 | 109 | RRRRRREKR |
6 | 103 | 108 | RRRREK |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EU429445 | 0.0 | EU429445.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1C mRNA, complete cds. |