PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G23120.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 488aa    MW: 51298 Da    PI: 5.6114
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G23120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.6e-061455237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +++ C+ ++e  + l+C+ +   lC  C  + H        H
  OGLUM08G23120.1 14 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 55
                     7899*******9******************999545555555 PP
2CCT43.21.4e-154504781644
              CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      ++eK+irYesRK +A++R+RvKGrFvk++
  OGLUM08G23120.1 450 RYEKHIRYESRKLRADTRKRVKGRFVKSN 478
                      79************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-111360IPR000315B-box-type zinc finger
PROSITE profilePS501199.8831360IPR000315B-box-type zinc finger
CDDcd000211.80E-81660No hitNo description
PROSITE profilePS5101710.258435477IPR010402CCT domain
PfamPF062032.6E-10450477IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL  60
CAACAARPAA ARVASASAPA FLCADCDTGC GGDDGAALRV PVEGFSGCPA AAELAASWGL  120
DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG GRRLKGEALG  180
HQLAEMARRE AETAHPHTQP HSDLSPRTPR RTSAAASGRL QEKQAPPPLP HAAATAAAAA  240
AAQEAPLPYT SLLMMAPANC TELMENDRVG DEDENVLWES TAPSVPPTQI WDFNLGKSRD  300
HNENSALEVG FGSNNGGFMI KSYNDMLKEI SSGTTKDLED IYDSRYCAAA EDIMSTNVCQ  360
LSSKNPSTGS NKRKVSSCAS TIDGPTTSTS HVPAASGALG GSSNDRGSAL PKEISFCDQT  420
VVPTGADQRP CTIKIDSETL AQNRDNAMQR YEKHIRYESR KLRADTRKRV KGRFVKSNGA  480
HDDVSNGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649825.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0E0AY700.0A0A0E0AY70_9ORYZ; Uncharacterized protein
STRINGOGLUM08G23120.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.13e-18B-box type zinc finger protein with CCT domain