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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM08G22840.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MIKC_MADS |
Protein Properties |
Length: 315aa MW: 35243.6 Da PI: 10.2733 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM08G22840.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 83.8 | 1e-26 | 128 | 177 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
OGLUM08G22840.1 128 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 177
8***********************************************86 PP
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2 | K-box | 15.6 | 6.9e-07 | 242 | 284 | 43 | 85 |
K-box 43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85
+++L++ eL+ Le+++ ++l+ +++k + + + + ++ kk k
OGLUM08G22840.1 242 VNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 284
799********************99988777777777666665 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MVQLQDLSLS SIISCIKIHS AIIRPLSEEM GAGTMAPTGD SHDAIIPSET WILNSDETSR 60 RPRSPATLPP PVPTPLHGRA AAQQQQQQLA RRGDGEMEML GFVVDRWRSW GMEGGGRRRK 120 KGKVELRRIE DRTSRQVRFS KRRSGLFKKA YELSVLCDAQ VALLVFSPAG RLYEFASSTS 180 SIDTIFGRYW DLLDTTIDLN IEARESRLRQ KERSDDPVPK INHITQCCLI VQVIISVLES 240 NVNELNIAEL RGLEEAMTNA LTVVKNKLMM KVASVLPQSE KKRKSCSISE PRSGARASNL 300 TRLLEAKHGD GLRKK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-16 | 121 | 189 | 3 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK242980 | 1e-179 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |