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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM08G19500.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 322aa MW: 35633.8 Da PI: 6.4246 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM08G19500.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.4 | 5.1e-20 | 32 | 116 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e
OGLUM08G19500.1 32 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 116
*************************************999987777889*****************988776664......68*******8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MAQEAASAAA AAAGEEGALP QRRRKSAPGQ PWAHMETMHL LDAYEERWTR LRRGQLKAQQ 60 WEEVAADVAA RCAASGAALR KTGTQCRHKL EKLRKRYRIE GARPVTSLWP YFRRMERLER 120 GPLPVSSAFP PPPPAASPPA AASDEDEDED DDEEEDDEEE EEVEEPIPRN NTRSINGILR 180 DSGGGFSGFA PRPPPQQPPP SFAMLSTAPP RKRVPYEAFQ AKAAMADKVK EDEPPPVASR 240 PGGGANEQLS AVLRDFGQGI MRLERRRMEM QWEIDRGWKE TEARHNRMLL DAQRHLHEAL 300 AAAPPPAKKA RREHGGGGGD GS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005918 | 0.0 | AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |