 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OGLUM08G16380.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
TCP |
| Protein Properties |
Length: 266aa MW: 27741.3 Da PI: 5.652 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM08G16380.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 111.8 | 9.5e-35 | 87 | 207 | 3 | 124 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94
++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt +s +a ++ ++++++a+++a
OGLUM08G16380.1 87 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPDSADAAAApaF---AAAPPPADQHSSAMAAA 177
689**********************************************************9955555333221...11111122222334444 PP
TCP 95 akskksqksaasalnlakesrakararare 124
a s ++k +as ++ + s+a+ar r ++
OGLUM08G16380.1 178 AASAAKEKGEASSSSTTNASSARARNRGHD 207
455555555555566777777777777554 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MSAPSSSSSP STLDEYDARF FFPGADAYTA GHRQDEETLE AVLRQPVTTT AAVAAAAAAV 60
EGGGGGGGGG AGGSPAAAAA ATRRRPFRTD RHSKIRTAQG VRDRRMRLSV GVARDFFALQ 120
DKLGFDKASR TVEWLLTQSK HAIDRLTLPD SADAAAAPAF AAAPPPADQH SSAMAAAAAS 180
AAKEKGEASS SSTTNASSAR ARNRGHDGSS PVAPMDERGR RGVELDWTAA AAASTEQPMD 240
GLEYYFQYYN HLEEIMSCDP TTTTDE
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
