 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OGLUM08G15410.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 420aa MW: 45139.6 Da PI: 4.7613 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM08G15410.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62 | 8.8e-20 | 158 | 211 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k
OGLUM08G15410.1 158 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 211
56789************************************************9 PP
|
| 2 | HD-ZIP_I/II | 132.4 | 1.7e-42 | 157 | 248 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal++++++L +++++Lr+++
OGLUM08G15410.1 157 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVI 248
69**************************************************************************************9985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MGFSLYPMKT STRMLWSTSF FRHKPTPSRA AAASRRRSAR LVGARACVNG RAASRSGFLG 60
FLEKGGEEGE ESMDPGRVVF DSGVARRACP GGAQMLLFGG GGSANSGGFF RGVPAAVLGM 120
DESRSSSSAA GAGAKRPFFT THEELLEEEY YDEQAPEKKR RLTAEQVQML ERSFEEENKL 180
EPERKTELAR RLGMAPRQVA VWFQNRRARW KTKQLEHDFD RLKAAYDALA ADHHALLSDN 240
DRLRAQVISL TEKLQDKETS PSSATITTAA QEVDQPDEHT EAASTTGFAT VDGALAAPPP 300
GHQQPPHKDD LVSSGGTNDD GDGGGAAVVV FDVTEGANDR LSCESAYFAD AAEAYERDCA 360
GHYALSSEEE DGGAVSDEGC SFDLPDAAAA AMFSAAGVVH HDAAADEEAQ LGSWTAWFWS
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 205 | 213 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF145729 | 0.0 | AF145729.1 Oryza sativa homeodomain leucine zipper protein (Oshox5) mRNA, complete cds. |
