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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM08G15030.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 278aa MW: 29380.8 Da PI: 7.7621 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM08G15030.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.5 | 9.5e-20 | 103 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa +++a+ +l+g
OGLUM08G15030.1 103 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALTYDQAAYRLRG 152
59******9.**********955...5*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MAAAIEGNLM RALGEAPSPQ MQKIAPPPFH PSLPPAPANF SSAGVHGFHY MGPAQLSPAQ 60 IQRVQAQLHM QRQAQSGLGP RAQPMKPASA AAPAAAAARA QKLYRGVRQR HWGKWVAEIR 120 LPRNRTRLWL GTFDTAEEAA LTYDQAAYRL RGDAARLNFP DNAASRGPLD AAVDAKLQAI 180 CDTIAASKNA SSRSRGGAGR AMPINAPLVA AASSSSGSDH SGGGDDGGSE TSSAAASPLA 240 EMEQLDFSEV PWDEAEGFAL TKYPSYEIDW DSLLNNNN
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK105725 | 0.0 | AK105725.1 Oryza sativa Japonica Group cDNA clone:001-201-G08, full insert sequence. |
GenBank | AP004658 | 0.0 | AP004658.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0042B03. |
GenBank | AP004691 | 0.0 | AP004691.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0453D01. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | FJ940221 | 0.0 | FJ940221.1 Oryza sativa Japonica Group clone KCS046C03 AP domain DRE binding factor mRNA, complete cds. |
Publications
? help Back to Top |
- Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Iwase A, et al.
WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] - Ikeuchi M, et al.
PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] - Iwase A, et al.
WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]
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