PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 274aa MW: 29611.9 Da PI: 6.6917

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G04530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.7	4.4e-11	78	134	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g OGLUM08G04530.1 78 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 134 79*****************55558777778888.999999************98 PP
2	AP2	50.1	6.7e-16	179	233	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++k +grW A+I e + k ++lg+f t+ eAa+a++ a+ +l+g+ OGLUM08G04530.1 179 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 233 67***999.9**99953323..36******99***********995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.5E-8	78	134	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-11	78	145	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.0E-10	79	145	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.751	79	144	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-13	79	150	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-17	179	242	IPR016177	DNA-binding domain
Pfam	PF00847	1.3E-11	179	232	IPR001471	AP2/ERF domain
CDD	cd00018	4.52E-20	179	242	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.7E-19	180	240	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.518	180	240	IPR001471	AP2/ERF domain
SMART	SM00380	3.8E-25	180	246	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-8	181	192	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-8	222	242	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG 60 GGKLVAETMR KYAAPRSSRY HGVTRLKWSG KFEAHLWDNT SQVEGRKRKG KHGSYVTEEN 120 AARAHDLAAL KYWGAGPNTK LNFNVSDYEK EIERMKTMSQ DEFVVYIRRQ SSCFSRGTSS 180 YRGVTRRKDG RWQARIGRIG ESRDTKDIYL GTFETEIEAA EAYDLAAIEL RGAHAVTNFD 240 ISNYCEDGLK KLEASSEVPK LLEGPSKAAK LAGR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY685118	0.0	AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650903.1	1e-154	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q84Z02	2e-65	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A0E0ARD7	0.0	A0A0E0ARD7_9ORYZ; Uncharacterized protein
STRING	OGLUM08G04530.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	4e-66	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]