PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G03510.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 781aa    MW: 84940.8 Da    PI: 6.4766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G03510.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-0781107128
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIa 28 
                      r rWT+ E+ ++++a k++G   W +I 
  OGLUM08G03510.3  81 RERWTEAEHNRFLEALKLYGRA-WQRIE 107
                      78******************88.*9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.66E-675109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-779109IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.1E-481108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MQLLSRRRRG RRSEAASLVG IALLALEGDG AVGHSFGGGG ARIKEVFGLR RLTAIGSIQI  60
NSSGEEAVVK VRKPYTITKQ RERWTEAEHN RFLEALKLYG RAWQRIEAIN NGTSPGQAHD  120
IDIPPPRPKR KPNSPYPRKS CLSSETSTRE VQNDKATISN MTNNSTAQMA GDAALEKLQR  180
KEISEKGSCS EVLNLFREVP SASFSSVNKS SSNHGASRGL EPTKTEVKDV VILERDSISN  240
GAGKDAKDIN DQEMERLNGI HISSKPDHSH ENCLDTSSQQ FKPKSNSVET TYVDWSAAKA  300
SHYQMDRNGV TGFQATGTEG SHPDQTSDQM GGASGTMNQC IHPTLPVDPK FDGNAAAQPF  360
PHNYAAFAPM MQCHCNQDAY RSFANMSSTF SSMLVSTLLS NPAIHAAARL AASYWPTVDG  420
NTPDPNQENL SESAQGSHAG SPPNMASIVA ATVAAASAWW ATQGLLPLFP PPIAFPFVPA  480
PSAPFSTADV QRAQEKDIDC PMDNAQKELQ ETRKQDNSEA MKVIVSSETD ESGKGEVSLH  540
TELKISPADK ADTKPAAGAE TSDVFGNKKK QDRSSCGSNT PSSSDIEADN APENQEKAND  600
KAKQASCSNS SAGDNNHRRF RSSASTSDSW KEVSEEVVVY QHSAYSHLSY SLNIHHCFSN  660
SHFCCQGRLA FDALFSRERL PQSFSPPQVE GSKEISKEEE DEVTTVTVDL NKNAAIIDQE  720
LDTADEPRAS FPNELSNLKL KSRRTGFKPY KRCSVEAKEN RVPASDEVGT KRIRLESEAS  780
T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044600.0AP004460.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0438H08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649844.10.0protein LHY isoform X2
RefseqXP_015649845.10.0protein LHY isoform X2
TrEMBLA0A0E0AR140.0A0A0E0AR14_9ORYZ; Uncharacterized protein
STRINGOGLUM08G03510.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-29circadian clock associated 1