PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G02220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 960aa MW: 105831 Da PI: 9.0207 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.3e-07 | 321 | 341 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G C++G++C++ H+ OGLUM08G02220.1 321 PCHDFVK-GRCSRGANCRYVHD 341 8******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.018 | 232 | 257 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 236 | 256 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 236 | 258 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 316 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 316 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 319 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 321 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 375 | 402 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-7 | 376 | 400 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-5 | 376 | 401 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 379 | 401 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 960 aa Download sequence Send to blast |
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGNDLL PSQDFGHGND 60 KQIGESVNLK STVSMHHGSA GHEHDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW 120 HNRGFEKAAG NQGMGRYADD RRRGDGWGTT LSRGYSSRIS SSGPDVWKRS RSPLSPRGGW 180 NRSRRNRSRS RSRSRSRSIG RGRGRSRSRS KSPYFSDRGS EWRVERGRSS GGPALPCRDF 240 VAGRCRRGSN CRFPHEDGVR RQLDEHYPVD SRERYGHQNR DFMDPREQDD YLRSRPLRGG 300 HYDEGTWERS EPRREYRSTM PCHDFVKGRC SRGANCRYVH DDSTSHGGWR DEVRDNAIGR 360 SGPDSSYRNR TEHRRTNKNP CKFFANGGCR RGQNCPYLHE EASQSQMGLG APDEPGYTGG 420 PTTRGDYLSW SEQNNSVQAS SHVLSRDDRE NPVPHGTGRN DSRYENKNRH SKDAGSSQYQ 480 IFPQDDFGSV GQNKPEIAAS QLPQFIPSVQ TGTESINIDK VSDMGGQSGP GTVGNLSMQI 540 GMHSANLLGG HNLGQKAESQ DAISQISAAP SLPGATQLQN TTSSVPLNSQ VQQSDFSLHP 600 NRQDQFAVPH ATTNNSAPSM QSQPVAPYMG HSQHGYIMGA QSLPDLSVHN GQIFNVGQVP 660 QNLPTIVHAG QNQATSDTAN LGRDSGDQSL HNTHNFQPVA PNEQTQSQTL QGLSVVASSS 720 SVDMAGAPLS HNAVSSQEEV RRVTASLAQY FVPSLTADTS GLQSSQPDPN SSLMNNSSAA 780 PQAVQPNHWP WLQQAGMVQP SHIVPSEQPA PQTFQAPMAA GSSNGNPLIL PHSVAPTGPA 840 AALATNETTP AENKKEEPKD TDAEANEDGE NKKSKDSKAL KMFKLALADF VKDALKPTWK 900 EGQMSREVHK TIVKKVVDKV TTTVENTPQT KEKIDIYMSY SREKLNKLVQ AYVGKYAKKD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 196 | RSRSRSRSRSR |
2 | 188 | 196 | RSRSRSRSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100455 | 0.0 | AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650360.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_025883327.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A0E0AQJ7 | 0.0 | A0A0E0AQJ7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G02220.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-09 | C3H family protein |
Publications ? help Back to Top | |||
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