 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OGLUM07G03110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
YABBY |
| Protein Properties |
Length: 213aa MW: 23658.7 Da PI: 10.4712 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM07G03110.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 110.2 | 3.9e-34 | 1 | 103 | 1 | 111 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94
++v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h ++++++++++n+ s+++++++++t
OGLUM07G03110.1 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH--------QVQNRGFQGNNFGSYDIASRNQRT 86
57999********************************************************9........99********************** PP
YABBY 95 svsseklsenedeevpr 111
s++++ +++++++ + +
OGLUM07G03110.1 87 STAMYPMPTSQQQPLRK 103
********999987665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ 60
DHQVQNRGFQ GNNFGSYDIA SRNQRTSTAM YPMPTSQQQP LRKDSVSRLH TTDLSRRRYR 120
GLKPAILRLA TGRHSVLLQR TGLIFPGSIS ASASPTAAAA ATNRGGAACR PATDRRHPRR 180
RAAATGRECA RRRDDDDDDD ILLSRVPLSS PRN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB274013 | 0.0 | AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds. |
| GenBank | AK070045 | 0.0 | AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence. |
| GenBank | CT828681 | 0.0 | CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence. |
| GenBank | CT828682 | 0.0 | CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence. |
| GenBank | CT828683 | 0.0 | CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence. |
| GenBank | CT832577 | 0.0 | CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence. |
| GenBank | FJ750932 | 0.0 | FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds. |
