PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G02770.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 150aa MW: 15305.1 Da PI: 9.2922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G02770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k+F + L H++ H OGLUM07G02770.1 56 FPCLFCNKTFVKSQALGGHQNAH 78 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.2E-4	54	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.05E-6	54	82	No hit	No description
PROSITE profile	PS50157	11.053	56	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
METSSASYSA PPPPCRPSSS SSSSATVDLS LSLAAPAATA PTTAVVNGKG GVRRLFPCLF 60 CNKTFVKSQA LGGHQNAHRK ERVAGGGGWN PYVYDVGSGA AVPTVASHGV TAVDGWRRWS 120 DAGGERATKK GSSSMGVAGD GEELVLELRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM149736	1e-34	HM149736.1 Oryza sativa Japonica Group cultivar Rathu Heenati prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149737	1e-34	HM149737.1 Oryza sativa Japonica Group cultivar Chabli Chabol Glang prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149738	1e-34	HM149738.1 Oryza sativa Japonica Group cultivar Kao King Lang prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149739	1e-34	HM149739.1 Oryza sativa Japonica Group cultivar TP34 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149740	1e-34	HM149740.1 Oryza sativa Japonica Group cultivar Lemont prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149741	1e-34	HM149741.1 Oryza sativa Japonica Group cultivar Maybelle prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149742	1e-34	HM149742.1 Oryza sativa Japonica Group cultivar Rosemont prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149743	1e-34	HM149743.1 Oryza rufipogon bio-material 04WHCL prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149744	1e-34	HM149744.1 Oryza rufipogon bio-material W1944 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149745	1e-34	HM149745.1 Oryza rufipogon bio-material YD2-0069 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149746	1e-34	HM149746.1 Oryza rufipogon bio-material YD2-0267 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149747	1e-34	HM149747.1 Oryza rufipogon bio-material IRGC:104415 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149748	1e-34	HM149748.1 Oryza rufipogon bio-material YD2-0782 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149749	1e-34	HM149749.1 Oryza rufipogon bio-material YD2-1008 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149750	1e-34	HM149750.1 Oryza rufipogon bio-material YD4-50 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149751	1e-34	HM149751.1 Oryza rufipogon bio-material YD4-189 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149752	1e-34	HM149752.1 Oryza rufipogon bio-material S1020 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149753	1e-34	HM149753.1 Oryza rufipogon bio-material S4012 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149754	1e-34	HM149754.1 Oryza rufipogon bio-material S4013 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149755	1e-34	HM149755.1 Oryza rufipogon bio-material IRGC:100599 prostrate growth 1 (PROG1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646457.1	4e-31	zinc finger protein GIS3
TrEMBL	A0A0E0AFU9	1e-104	A0A0E0AFU9_9ORYZ; Uncharacterized protein
STRING	OGLUM07G02770.1	1e-104	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP384	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	3e-11	C2H2 family protein