PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G02040.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 510aa MW: 54998.9 Da PI: 4.8191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G02040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2.1e-05	356	374	37	55
-STCHHHHHHHHHHHHHHH CS HLH 37 KlsKaeiLekAveYIksLq 55 +Ka+iL +A+eY+ksLq OGLUM07G02040.1 356 QTDKASILDEAIEYLKSLQ 374 479***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-7	349	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-4	355	378	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-6	356	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MPPRSTQEDV GVREERMTPA CGGRVKCDLP AVEELRLHGC GCNCKVVVVV GDDDEPEEAL 60 AVIKIFRFLF FSFLFDLVFC VAMVLDRCKD WRILFCLLAW RSSDGELVEL LWQDGGVVAH 120 AQTRHRSPGL LARSGVTGEE ETASAWFADG GGGDDALGVG MGRDIYSQLW HSFANVDGHA 180 AGALALATPT PRAAARSDDV LSRLDEAGLS ICGSNAVAAP ALPADDDDDA APREEEEEEV 240 EEGTGAARAA GASSSGGSGS GSGSYPLFKR GREELVDSLS EVADETRPSK RPAAKRRTRA 300 AEVHNLSERV RPQEHQPTID GYMVLHHLQQ EKKGSHQRKV ESIARTGASL QQAVSQTDKA 360 SILDEAIEYL KSLQMQVQIM WMTTGIAPMM FPGAHQLMPP MGMGLNTACM PGAQGLNQLQ 420 RTTHYMNNSL PNQMPQIPSP VMSAPNVPND MQSDNRIRGP RNPFLHCNDT LTATAQVPGF 480 PYGSQIAEQN EIQELLSGAV IPSSSDGTIK

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MPPRSTQEDV GVREERMTPA CGGRVKCDLP AVEELRLHGC GCNCKVVVVV GDDDEPEEAL  60
AVIKIFRFLF FSFLFDLVFC VAMVLDRCKD WRILFCLLAW RSSDGELVEL LWQDGGVVAH  120
AQTRHRSPGL LARSGVTGEE ETASAWFADG GGGDDALGVG MGRDIYSQLW HSFANVDGHA  180
AGALALATPT PRAAARSDDV LSRLDEAGLS ICGSNAVAAP ALPADDDDDA APREEEEEEV  240
EEGTGAARAA GASSSGGSGS GSGSYPLFKR GREELVDSLS EVADETRPSK RPAAKRRTRA  300
AEVHNLSERV RPQEHQPTID GYMVLHHLQQ EKKGSHQRKV ESIARTGASL QQAVSQTDKA  360
SILDEAIEYL KSLQMQVQIM WMTTGIAPMM FPGAHQLMPP MGMGLNTACM PGAQGLNQLQ  420
RTTHYMNNSL PNQMPQIPSP VMSAPNVPND MQSDNRIRGP RNPFLHCNDT LTATAQVPGF  480
PYGSQIAEQN EIQELLSGAV IPSSSDGTIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003824	0.0	AP003824.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1343_B12.
GenBank	AP004010	0.0	AP004010.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1351_C05.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648046.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBL	A0A0E0AFL2	0.0	A0A0E0AFL2_9ORYZ; Uncharacterized protein
STRING	OGLUM07G02040.2	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	1e-12	phytochrome interacting factor 3-like 6