PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G23990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 267aa MW: 27709 Da PI: 8.4909 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.7 | 4.4e-07 | 166 | 208 | 21 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+ L++e+ l+ + +l +e+ OGLUM06G23990.1 166 RPRKKMRLPEIQQLVRSLTVENDGLREEMVALQRACTALSKEN 208 89***********************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-4 | 166 | 205 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MTAADAEACA VAAAADIICS FRGADLAGWT PPWGTAAAKG KEVVVEEEEE EELAWPTVAR 60 GKRSRSSRRR SPSGSGSAAT KGRWARGSPA SPLDYSGGSG SGSAASTSGG EDGAFCSPPP 120 PPPPVVTAAA ATTPTAAPTP SPAKVGPAGR RQLILPTPPP RPAGQRPRKK MRLPEIQQLV 180 RSLTVENDGL REEMVALQRA CTALSKENCK LETRLEKSSK RNGTKSEGQQ ARPQPDEPAA 240 KQESQNGFVL PDLNLPVEDM AADGSAP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | RPRKKMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644355.1 | 1e-114 | uncharacterized protein LOC4341662 | ||||
TrEMBL | A0A0E0ACJ3 | 0.0 | A0A0E0ACJ3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G23990.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3790 | 29 | 51 |