PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G19290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 307aa MW: 32319.3 Da PI: 8.7102 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 90.7 | 1.8e-28 | 12 | 138 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..................... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..................... 74 F+ k+y+++ed+ ++ +i w + +nsfvv d+ f++++Lp +Fkh+nf+SFvRQLn+Y + ++ ++s++ OGLUM06G19290.1 12 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYVSLVTPSSISSSHHtpplsalhimlpwilsgtqlk 105 9**********************************************************766555555554448999****9999999998887 PP .....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .....kekiweFkhksFkkgkkellekikrkks 102 +++ weF+h sF +g+++ll++i r+ s OGLUM06G19290.1 106 gfrkvDPDRWEFAHASFLRGQTHLLRNIVRRGS 138 7765449***********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.0E-40 | 8 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.4E-34 | 9 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.99E-28 | 9 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.0E-25 | 12 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-12 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-12 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-12 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MAAAAGGGAA PFVWKTYRMV EDPGTDGVIG WGKGNNSFVV ADPFVFSQTL LPAHFKHNNF 60 SSFVRQLNTY VSLVTPSSIS SSHHTPPLSA LHIMLPWILS GTQLKGFRKV DPDRWEFAHA 120 SFLRGQTHLL RNIVRRGSAA AGGGGGGKRR DASADGGGGG DEDMTMVATE VVRLKQEQRT 180 IDDRVAAMWR RVQETERRPK QMLAFLLKVV GDRDKLHRLV GGGGNGNGAA TAAAADNGFA 240 DAARGGCGEK RARLLLDGDN TGAFGPDAVD FAGFYTGADM FPDVAVDAAA AAGSAGCSFA 300 FGVDSGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-18 | 4 | 136 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-18 | 4 | 136 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-18 | 4 | 136 | 20 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003682 | 0.0 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641665.1 | 1e-139 | heat stress transcription factor C-2b | ||||
Swissprot | Q0DBL6 | 1e-140 | HFC2B_ORYSJ; Heat stress transcription factor C-2b | ||||
TrEMBL | A0A0E0AAT1 | 0.0 | A0A0E0AAT1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G19290.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-49 | heat shock transcription factor C1 |